Non-Coding RNA Search

Ss1.1-Pig3-SRG8023K08.5

Sequence:


               
               CACTTCTGGGCCTGGAGATCTCTTTCTAACAGAGCCCTCGAACCTTGCTCCTGGCCAGGT
GTGGGGCTGGCAGGGTGGAGGGACGGACCTCACAATACACTCGAAGGGAGCCAGGTGTTG
GGGTGCTGCACAGCAGACCCGACACCCTCTTGTCAAAATAAAAAGAACACTTCTGGAGTT
CCCATCATGGCTCAATGGTTAACAAATCCGACTAGGAACCATGAGGTTACGGGTTCAATC
CCTGGCCTCGCTTAGTGGGTTAAGGATCCGGCATTGCCATGAGCTGTGGTGTAGGTCACA
GACGCGGCTCGGGGCCTCACACACATCGAAGCCCATAATAAGATCCGTGCCTGCGGGGAG
CGCCTCAACCTGGGTCTCAGCAGGGCCCATCCAGCACAGAGTAAACCGCAGAAGGTGCAG
ACCCCTGACAAACAGCCGCTCCGACCGCTGGTCCCAGATGCCAGCAAGCAGCGGCTGATG
GAGGACACGGAGGACTGGCGGCCGCGGCCTGGGACAGGCCAGTCCCGTTCCTTCCGCATC
CTCGCCCACCTCACGGGCACCGAGTTCATGCAAGACCCGGATGAAGAGCACCTGAAAAAA
TCAAGGGAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTTCTGGGCCTGGAGATCTCTTTCTAACAGAGCCCTCGAACCTTGCTCCTGGCCAGGT
GTGGGGCTGGCAGGGTGGAGGGACGGACCTCACAATACACTCGAAGGGAGCCAGGTGTTG
GGGTGCTGCACAGCAGACCCGACACCCTCTTGTCAAAATAAAAAGAACACTTCTGGAGTT
CCCATCATGGCTCAATGGTTAACAAATCCGACTAGGAACCATGAGGTTACGGGTTCAATC
CCTGGCCTCGCTTAGTGGGTTAAGGATCCGGCATTGCCATGAGCTGTGGTGTAGGTCACA
GACGCGGCTCGGGGCCTCACACACATCGAAGCCCATAATAAGATCCGTGCCTGCGGGGAG
CGCCTCAACCTGGGTCTCAGCAGGGCCCATCCAGCACAGAGTAAACCGCAGAAGGTGCAG
ACCCCTGACAAACAGCCGCTCCGACCGCTGGTCCCAGATGCCAGCAAGCAGCGGCTGATG
GAGGACACGGAGGACTGGCGGCCGCGGCCTGGGACAGGCCAGTCCCGTTCCTTCCGCATC
CTCGCCCACCTCACGGGCACCGAGTTCATGCAAGACCCGGATGAAGAGCACCTGAAAAAA
TCAAGGGAAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22212828|gb|AAM94407.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22212828|gb|AAM94407.1|

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               311-426, gnl|bosTau2|chr1 (62139280-62139395)
               

               
               311-426, gnl|canFam2|chrX (62781614-62781684)
               

               
               311-426, gnl|dasNov1|scaffold_63045 (3535-3465)
               

               
               311-426, gnl|hg17|chr8 (28151982-28152052)
               

               
               311-426, gnl|mm7|chr13 (54596845-54596695)
               

               
               311-426, gnl|oryCun1|scaffold_200825 (54021-54185)
               

               
               311-426, gnl|panTro1|chr7 (29137096-29137166)
               

               
               311-426, gnl|rheMac2|chr8 (28386395-28386464)
               

               
               311-426, gnl|rn3|chr17 (15169968-15170032)
               


               
               455-611, gnl|bosTau2|chr1 (62139527-62139683)
               

               
               455-611, gnl|Hg17|chr5 (176850730-176850195)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               311-426, gnl|bosTau2|chr1 (62139280-62139395)
               

               
               311-426, gnl|canFam2|chrX (62781614-62781684)
               

               
               311-426, gnl|dasNov1|scaffold_63045 (3535-3465)
               

               
               311-426, gnl|hg17|chr8 (28151982-28152052)
               

               
               311-426, gnl|mm7|chr13 (54596845-54596695)
               

               
               311-426, gnl|oryCun1|scaffold_200825 (54021-54185)
               

               
               311-426, gnl|panTro1|chr7 (29137096-29137166)
               

               
               311-426, gnl|rheMac2|chr8 (28386395-28386464)
               

               
               311-426, gnl|rn3|chr17 (15169968-15170032)
               


               
               455-611, gnl|bosTau2|chr1 (62139527-62139683)
               

               
               455-611, gnl|Hg17|chr5 (176850730-176850195)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	311-426, gnl\|bosTau2\|chr1 (62139280-62139395)
	311-426, gnl\|canFam2\|chrX (62781614-62781684)
	311-426, gnl\|dasNov1\|scaffold_63045 (3535-3465)
	311-426, gnl\|hg17\|chr8 (28151982-28152052)
	311-426, gnl\|mm7\|chr13 (54596845-54596695)
	311-426, gnl\|oryCun1\|scaffold_200825 (54021-54185)
	311-426, gnl\|panTro1\|chr7 (29137096-29137166)
	311-426, gnl\|rheMac2\|chr8 (28386395-28386464)
	311-426, gnl\|rn3\|chr17 (15169968-15170032)

	455-611, gnl\|bosTau2\|chr1 (62139527-62139683)
	455-611, gnl\|Hg17\|chr5 (176850730-176850195)