Non-Coding RNA Search

Ss1.1-Pig3-SRG8023K19.5

Sequence:


               
               AGGCGGCCCTGGGCCAGTGGGGCCTGCAGCGGGATATTCCAGGGCGGCGAAGGCGGGTTT
ACCATCTCGGGATTGCATGGCTTTCTGTACCGGGCTCCGGGGCCCCTTCGCCCAAGTGAG
CAGAGCCCTCAGCCAGCGCTGTTTCAGCACCACTGGGAGCCTCAGTGCGATTCAGAAGAT
GACTCGGGTGCGCGTGGTGGACAACAGTGCCCTGGGGACCACCCCCTACCATCGCCCCCC
TCGCTGCATCCACGTCTATAACAAGACCGGGGTGGGCAAGGTGGGCGACCGGATCCTGCT
GGCCATCAGGGGGCAGAAGAAAAAGGCGCTCATCGTGGGGCATCGCATGCCTGGTCCCCG
CATGACCCCCAGGTTCGACTCCAACAACGTGGTCCTCCTCGAGGACAACGGGAACCCTGT
GGGGACCCGAATCAAGACACCCATCCCCAGCAGCCTGCGCCAGAGGGAAGGCGAGTTTTC
CAAGGTGCTGGCCATTGCTCAGAACTTTGTGTGAGCAGAGCCAGGGTGCCAGCCAGGGGC
TCGTGGATGGAGCCATTCTGAGAACTGTGCCTCTGCTGAGAGGGAGCCCTGGGAACAGTG
TCCTGTGGGGGAATAAACATTTTCTTGTACGTTTGAGCTTCCTGGGTGTGGGTGTGGGGT
AAGTGCTGCTGACGCAGTTAAGAGATGCCGCACGGGATGGTGATCTTTGCCTACAGCAGC
CTGTGAACTCACCCACGGCTGTCAGGCTCTGGATAGCTGAGGTGCAAGTCCAATGCCCAT
TTATAAAGGTACAGTGGAATCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCGGCCCTGGGCCAGTGGGGCCTGCAGCGGGATATTCCAGGGCGGCGAAGGCGGGTTT
ACCATCTCGGGATTGCATGGCTTTCTGTACCGGGCTCCGGGGCCCCTTCGCCCAAGTGAG
CAGAGCCCTCAGCCAGCGCTGTTTCAGCACCACTGGGAGCCTCAGTGCGATTCAGAAGAT
GACTCGGGTGCGCGTGGTGGACAACAGTGCCCTGGGGACCACCCCCTACCATCGCCCCCC
TCGCTGCATCCACGTCTATAACAAGACCGGGGTGGGCAAGGTGGGCGACCGGATCCTGCT
GGCCATCAGGGGGCAGAAGAAAAAGGCGCTCATCGTGGGGCATCGCATGCCTGGTCCCCG
CATGACCCCCAGGTTCGACTCCAACAACGTGGTCCTCCTCGAGGACAACGGGAACCCTGT
GGGGACCCGAATCAAGACACCCATCCCCAGCAGCCTGCGCCAGAGGGAAGGCGAGTTTTC
CAAGGTGCTGGCCATTGCTCAGAACTTTGTGTGAGCAGAGCCAGGGTGCCAGCCAGGGGC
TCGTGGATGGAGCCATTCTGAGAACTGTGCCTCTGCTGAGAGGGAGCCCTGGGAACAGTG
TCCTGTGGGGGAATAAACATTTTCTTGTACGTTTGAGCTTCCTGGGTGTGGGTGTGGGGT
AAGTGCTGCTGACGCAGTTAAGAGATGCCGCACGGGATGGTGATCTTTGCCTACAGCAGC
CTGTGAACTCACCCACGGCTGTCAGGCTCTGGATAGCTGAGGTGCAAGTCCAATGCCCAT
TTATAAAGGTACAGTGGAATCTCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|57094504|ref|XP_532153.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|57094504|ref|XP_532153.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               384-594, + strand, RNAz p=0.917792

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               384-594, + strand, RNAz p=0.917792

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               145-689, gnl|bosTau2|chr23 (17670509-17671059)
               

               
               145-689, gnl|Hg17|chr6 (44189927-44189347)
               

               
               145-689, gnl|Mm7|chr17 (43827449-43827952)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-689, gnl|bosTau2|chr23 (17670509-17671059)
               

               
               145-689, gnl|Hg17|chr6 (44189927-44189347)
               

               
               145-689, gnl|Mm7|chr17 (43827449-43827952)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               elu (0.770713)
               

               
               cga (0.558191)
               

               
               cki (0.495704)
               

               
               mcp (0.341297)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.770713)
               

               
               cga (0.558191)
               

               
               cki (0.495704)
               

               
               mcp (0.341297)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	145-689, gnl\|bosTau2\|chr23 (17670509-17671059)
	145-689, gnl\|Hg17\|chr6 (44189927-44189347)
	145-689, gnl\|Mm7\|chr17 (43827449-43827952)

	elu (0.770713)
	cga (0.558191)
	cki (0.495704)
	mcp (0.341297)
	cje (0.330469)
	nco (0.323468)
	ese (0.253004)
	eru (0.240096)
	nlu (0.191681)
	ill (0.175593)
	eye (0.170503)
	hyp (0.142837)
	cst (0.140036)
	hlv (0.139256)
	pla (0.133672)
	nmm (0.132802)
	cly (0.120642)
	ebs (0.118301)
	med (0.116252)