Non-Coding RNA Search

Ss1.1-Pig3-SRG8023L04.5

Sequence:


               
               ATCTGCACAAACTTAACAAAGGAACCTCCTCTGAGATCCAAAGGTGATGGGTTTTCCTGT
GAAGATGCCTAGGACATGGTTCAGCTAGAAGGGAGGGAGGAGGCCCAGGGTTTCCCAAAT
GCAGCCATATGGCCTTTCAACTGCCATGGTTTCAAGAGTGGAAGCTGCTCTTTACCTCAG
AAGGTTGAAGCAGAATTGGCAACTGCAGATGTCTTAAGAACTTCAAGATCCTTTGGTCTT
GTGACCTGTGTCATTCCATACTATGCATGGGGATTAATTAGTCATGTTTCCAAGGGACAT
CTTCAGGGCCTAGTTCATATTGTAGACCAGGTATTTTATTTGTATTTGTCAAGTAAAGAC
CTACGTACCTTGCTTCTTTTAACATTGGGCTTGAACTGGGCTCCCCCTAACATCTCCATT
TCATCTGTACTTTCTAAGCCAAGTCCGCCTGGTTCCCCTACTCCCTCCCAGATCCTGCCA
ACGCTTACTCCCAAGCTTACTCCCAAGACGTCAGCCCTCTGTCATGTTTCATGGTCACAT
GGTACAGGGCACCCCCTTCACGGTAATGTACATATGTGTTCACACGTGTATGTGTAGCAC
GTAGCTCAGTCTGCTCAGCCACGTTGCTCCCAGCCCCATCGCCATCAATGTCCCAGGTGT
TCTTGCCGTGGCTACAATCTCCTGGAAACACAGGGGCTGTCCTTCCATGAACTGGTGACC
ACGGCCAATCAGGATCTGCTTTGCAGAACAGAATGTGAACCCATCACTTTGATGGCTTAC
TTGATTTATTTAATTAAAAATGAAAACATGCAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTGCACAAACTTAACAAAGGAACCTCCTCTGAGATCCAAAGGTGATGGGTTTTCCTGT
GAAGATGCCTAGGACATGGTTCAGCTAGAAGGGAGGGAGGAGGCCCAGGGTTTCCCAAAT
GCAGCCATATGGCCTTTCAACTGCCATGGTTTCAAGAGTGGAAGCTGCTCTTTACCTCAG
AAGGTTGAAGCAGAATTGGCAACTGCAGATGTCTTAAGAACTTCAAGATCCTTTGGTCTT
GTGACCTGTGTCATTCCATACTATGCATGGGGATTAATTAGTCATGTTTCCAAGGGACAT
CTTCAGGGCCTAGTTCATATTGTAGACCAGGTATTTTATTTGTATTTGTCAAGTAAAGAC
CTACGTACCTTGCTTCTTTTAACATTGGGCTTGAACTGGGCTCCCCCTAACATCTCCATT
TCATCTGTACTTTCTAAGCCAAGTCCGCCTGGTTCCCCTACTCCCTCCCAGATCCTGCCA
ACGCTTACTCCCAAGCTTACTCCCAAGACGTCAGCCCTCTGTCATGTTTCATGGTCACAT
GGTACAGGGCACCCCCTTCACGGTAATGTACATATGTGTTCACACGTGTATGTGTAGCAC
GTAGCTCAGTCTGCTCAGCCACGTTGCTCCCAGCCCCATCGCCATCAATGTCCCAGGTGT
TCTTGCCGTGGCTACAATCTCCTGGAAACACAGGGGCTGTCCTTCCATGAACTGGTGACC
ACGGCCAATCAGGATCTGCTTTGCAGAACAGAATGTGAACCCATCACTTTGATGGCTTAC
TTGATTTATTTAATTAAAAATGAAAACATGCAATGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-759, gnl|bosTau2|chr12 (34421501-34420729)
               

               
               2-759, gnl|Hg17|chr10 (73442449-73443260)
               

               
               2-759, gnl|Mm7|chr10 (59700761-59699959)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-759, gnl|bosTau2|chr12 (34421501-34420729)
               

               
               2-759, gnl|Hg17|chr10 (73442449-73443260)
               

               
               2-759, gnl|Mm7|chr10 (59700761-59699959)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               spl (0.143184)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

	2-759, gnl\|bosTau2\|chr12 (34421501-34420729)
	2-759, gnl\|Hg17\|chr10 (73442449-73443260)
	2-759, gnl\|Mm7\|chr10 (59700761-59699959)

	spl (0.143184)
	bla (0.124347)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)
	ldo (0.0970026)