Non-Coding RNA Search

Ss1.1-Pig3-SRG8023M21.3

Sequence:


               
               GCGCGTGCATCTCACAGTAGGCTTGTTCCTGACGGGAGGGTCGGAAGAGTTCCAATTGCC
TGCAAAATTGACGCCGTTGTGCAGGAGGGCGCGCTTGGGTCCTCTAGTTGGCCTGTTGGA
GACTCCCAAAAATGTCAACTCAAGGCCATACCTGGTCCCGACAAGTGAAGAAGGAGGATG
AAGAAGAGGACCCACTGGACCAGCTGATCTCCCGCTCTGGCTGTGCTGCTTCCCACTACG
CAGTGCAGGAGTGCATGGCCCAGCACCAGGACTGGCGACGGTGCCAGCCACAGGTGCAGG
CCTTCAAGGACTGCATGAATGACCAGCAGGCAAGGCGACGGGAGGAACTGCAGAGGAGGA
AGGAGCAGAGCAGTGCCCACCGTTGAGATCCCTAACCATTTATTCCCAGAGGAGGCCCTG
CAGAAACAAGCATCCAGAGAGATCATGGCAAGAAGTCCTAAACAGTGGGGGTGTGGGCCA
AGAAGTGTGAGACTTGGGGATCGTCTTTGGGCCTGGGGTTGAATTAGCAGCCTGCACATG
AGAGGCAGCCATGGGTTTGCCATGAAGAGCTGGCACAGCATCACATTGAGATCCCACACA
TCCTTACCTGTTGTGTGCCACCAAAATAGATACTGACCAGTATTTGCCACATAAAACAGT
GGGGTTGAGGGATGTGCTACCCGGTGTCTTGAGTCAGTGCGCCAAGTTCTGAGCTGATTC
TTTGGACATTTAATTTTAAAGTAAATTCACAATCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCGTGCATCTCACAGTAGGCTTGTTCCTGACGGGAGGGTCGGAAGAGTTCCAATTGCC
TGCAAAATTGACGCCGTTGTGCAGGAGGGCGCGCTTGGGTCCTCTAGTTGGCCTGTTGGA
GACTCCCAAAAATGTCAACTCAAGGCCATACCTGGTCCCGACAAGTGAAGAAGGAGGATG
AAGAAGAGGACCCACTGGACCAGCTGATCTCCCGCTCTGGCTGTGCTGCTTCCCACTACG
CAGTGCAGGAGTGCATGGCCCAGCACCAGGACTGGCGACGGTGCCAGCCACAGGTGCAGG
CCTTCAAGGACTGCATGAATGACCAGCAGGCAAGGCGACGGGAGGAACTGCAGAGGAGGA
AGGAGCAGAGCAGTGCCCACCGTTGAGATCCCTAACCATTTATTCCCAGAGGAGGCCCTG
CAGAAACAAGCATCCAGAGAGATCATGGCAAGAAGTCCTAAACAGTGGGGGTGTGGGCCA
AGAAGTGTGAGACTTGGGGATCGTCTTTGGGCCTGGGGTTGAATTAGCAGCCTGCACATG
AGAGGCAGCCATGGGTTTGCCATGAAGAGCTGGCACAGCATCACATTGAGATCCCACACA
TCCTTACCTGTTGTGTGCCACCAAAATAGATACTGACCAGTATTTGCCACATAAAACAGT
GGGGTTGAGGGATGTGCTACCCGGTGTCTTGAGTCAGTGCGCCAAGTTCTGAGCTGATTC
TTTGGACATTTAATTTTAAAGTAAATTCACAATCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q69YU4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q69YU4_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               207-366, + strand, RNAz p=0.839169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-366, + strand, RNAz p=0.839169

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK097302, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK097302, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               102-756, gnl|bosTau2|chr15 (42182686-42182053)
               

               
               102-756, gnl|Hg17|chr11 (73262102-73261467)
               

               
               102-756, gnl|Mm7|chr7 (96585302-96585876)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-756, gnl|bosTau2|chr15 (42182686-42182053)
               

               
               102-756, gnl|Hg17|chr11 (73262102-73261467)
               

               
               102-756, gnl|Mm7|chr7 (96585302-96585876)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               elu (0.385356)
               

               
               fty (0.351679)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cty (0.10408)

	102-756, gnl\|bosTau2\|chr15 (42182686-42182053)
	102-756, gnl\|Hg17\|chr11 (73262102-73261467)
	102-756, gnl\|Mm7\|chr7 (96585302-96585876)

	elu (0.385356)
	fty (0.351679)
	rec (0.17307)
	mcp (0.170648)
	cty (0.10408)