Non-Coding RNA Search

Ss1.1-Pig3-SRG8023M23.3

Sequence:


               
               AGTAACATGGACCCACGTGCTTGAGGCCTGGCAGCTGGACCAAGACAGCTGGCTTTGTGG
CTCCCGGGGGCGCTCTGCAGCCTCTAGAAAGGCACCCTTACCTCCTGGGGCTCCTCTGAC
GCCTTTCAGAGGAACATCTCCAAGGAACAGGAAGGACTCTGGCTAGAGCCTCCCGCCTCC
CCAGTTGTCTGTGTGCTCAGAGGCTCCTGGGCCCCTGCCTGGATGTCCCCTGCCCGTGTC
CCCAGGCCCTTGGCCCACAGGATGCACCCCTCTGCTTCTCTGTCTCTGTACAGTCTCAGT
TGCTTGCTCTTTCCCCTCCTGGGCAAGGGCTGAAGGAGGCCACTCCTCTGCTCCTTGGGG
GCTGCTCCCAAAGCGGATCCCCAGCTGGATCTCAAGGACGTTTGGGAGAGGGATGCCCAG
GAACGCTCTGAGGTTGACTTTCTATAGGCCATTTTGTACCTTCGTGGAGAAATGTGTCAC
CTCCCCCCAACCCAATTCACTCTTTTCTCCTATTTTGTAAAAAATAAAAATAAATAAGAT
AACAATAATAAGGGGAGGGAAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAACATGGACCCACGTGCTTGAGGCCTGGCAGCTGGACCAAGACAGCTGGCTTTGTGG
CTCCCGGGGGCGCTCTGCAGCCTCTAGAAAGGCACCCTTACCTCCTGGGGCTCCTCTGAC
GCCTTTCAGAGGAACATCTCCAAGGAACAGGAAGGACTCTGGCTAGAGCCTCCCGCCTCC
CCAGTTGTCTGTGTGCTCAGAGGCTCCTGGGCCCCTGCCTGGATGTCCCCTGCCCGTGTC
CCCAGGCCCTTGGCCCACAGGATGCACCCCTCTGCTTCTCTGTCTCTGTACAGTCTCAGT
TGCTTGCTCTTTCCCCTCCTGGGCAAGGGCTGAAGGAGGCCACTCCTCTGCTCCTTGGGG
GCTGCTCCCAAAGCGGATCCCCAGCTGGATCTCAAGGACGTTTGGGAGAGGGATGCCCAG
GAACGCTCTGAGGTTGACTTTCTATAGGCCATTTTGTACCTTCGTGGAGAAATGTGTCAC
CTCCCCCCAACCCAATTCACTCTTTTCTCCTATTTTGTAAAAAATAAAAATAAATAAGAT
AACAATAATAAGGGGAGGGAAGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               77-422, - strand, RNAz p=0.95386

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-422, - strand, RNAz p=0.95386

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               5-430, gnl|bosTau2|chr16 (1801996-1802429)
               

               
               5-430, gnl|canFam2|chr38 (4163900-4164386)
               

               
               5-430, gnl|dasNov1|scaffold_28054 (3885-4356)
               

               
               5-430, gnl|echTel1|scaffold_167861 (7937-8402)
               

               
               5-430, gnl|hg17|chr1 (201318004-201318475)
               

               
               5-430, gnl|Hg17|chr1 (201318543-201318125)
               

               
               5-430, gnl|mm7|chr1 (132840891-132840426)
               

               
               5-430, gnl|Mm7|chr1 (132840351-132840774)
               

               
               5-430, gnl|monDom2|scaffold_13 (5907014-5907530)
               

               
               5-430, gnl|oryCun1|scaffold_195216 (5935-5520)
               

               
               5-430, gnl|panTro1|chr1 (184261831-184262302)
               

               
               5-430, gnl|rheMac2|chr1 (165807059-165806588)
               

               
               5-430, gnl|rn3|chr13 (45852331-45851869)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-430, gnl|bosTau2|chr16 (1801996-1802429)
               

               
               5-430, gnl|canFam2|chr38 (4163900-4164386)
               

               
               5-430, gnl|dasNov1|scaffold_28054 (3885-4356)
               

               
               5-430, gnl|echTel1|scaffold_167861 (7937-8402)
               

               
               5-430, gnl|hg17|chr1 (201318004-201318475)
               

               
               5-430, gnl|Hg17|chr1 (201318543-201318125)
               

               
               5-430, gnl|mm7|chr1 (132840891-132840426)
               

               
               5-430, gnl|Mm7|chr1 (132840351-132840774)
               

               
               5-430, gnl|monDom2|scaffold_13 (5907014-5907530)
               

               
               5-430, gnl|oryCun1|scaffold_195216 (5935-5520)
               

               
               5-430, gnl|panTro1|chr1 (184261831-184262302)
               

               
               5-430, gnl|rheMac2|chr1 (165807059-165806588)
               

               
               5-430, gnl|rn3|chr13 (45852331-45851869)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	5-430, gnl\|bosTau2\|chr16 (1801996-1802429)
	5-430, gnl\|canFam2\|chr38 (4163900-4164386)
	5-430, gnl\|dasNov1\|scaffold_28054 (3885-4356)
	5-430, gnl\|echTel1\|scaffold_167861 (7937-8402)
	5-430, gnl\|hg17\|chr1 (201318004-201318475)
	5-430, gnl\|Hg17\|chr1 (201318543-201318125)
	5-430, gnl\|mm7\|chr1 (132840891-132840426)
	5-430, gnl\|Mm7\|chr1 (132840351-132840774)
	5-430, gnl\|monDom2\|scaffold_13 (5907014-5907530)
	5-430, gnl\|oryCun1\|scaffold_195216 (5935-5520)
	5-430, gnl\|panTro1\|chr1 (184261831-184262302)
	5-430, gnl\|rheMac2\|chr1 (165807059-165806588)
	5-430, gnl\|rn3\|chr13 (45852331-45851869)