Ss1.1-Pig3-SRG8023N05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGGAGATAGGTGTATGTAATGTGTGCCATTAGTAAGGTAATTTGCCAGTTGCATCCAT TTCTGTCAGTAGCTCTATAAATCAGTCAGCAGATAGTGGGGGAACAGACAATTTTGTCTT TATAAGTCAACTGAAAGAAGAAGTGATGTCACTTAAACGTCTCTTACAGCAGAGAGACCA GACCATTTTAGAAAAAGATAAAAAGTTAACTGAACTTAAGGCAGACTTTCAGTACCAAGA GTCAAACTTGAGAACAAAGATGAACAGTATGGAGAAAGCTCACAAAGAAACTGTGGAACA ACTTCAGGCCAAAAACAGAGAACTACTCAAACAGGTCGCAGCATTGTCAAAGGGTAAAAA GTTTGACAAAAGTGGAAGCATATTAACATCCCCTTAGAGAAAGTAGTTGTTCATTAGTGT TTCTGCTGAAAATGTAAAATTTGAAAAAAAGAAATTCTGTGAAGCCCTTAAATTTAGTGT GTAGTGGAAAAATATTTTTGCACACCAAATGAATTGGTGTGTTTCCTATTCACTTTTGTA ACTGATAACACAGCATTTATTTAAGTTGTAAAACATTCAAATAAAACTTCAACTGGTTTG AAGTAACTTTTTAATTATTTGATATCCAGCAACTTTTTTTGCCAGCAATAGTATTAAACA GCTGTCAAGGAGTGCATGAATAGTGCTCTTTCTAAAATGCAACATGCAATAATAGAGTAA GTATGGTTTTAAGAAGTCAGAGCAGCAGGGGTTTGGCTTTGATGTTTATTTTACATGATG ATCATTTCAGATAAAACAGTTTTCAATTTAGAAATACAGAAACTTTTAAACAAAAAAAGT TGTGAACACTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGGAGATAGGTGTATGTAATGTGTGCCATTAGTAAGGTAATTTGCCAGTTGCATCCAT TTCTGTCAGTAGCTCTATAAATCAGTCAGCAGATAGTGGGGGAACAGACAATTTTGTCTT TATAAGTCAACTGAAAGAAGAAGTGATGTCACTTAAACGTCTCTTACAGCAGAGAGACCA GACCATTTTAGAAAAAGATAAAAAGTTAACTGAACTTAAGGCAGACTTTCAGTACCAAGA GTCAAACTTGAGAACAAAGATGAACAGTATGGAGAAAGCTCACAAAGAAACTGTGGAACA ACTTCAGGCCAAAAACAGAGAACTACTCAAACAGGTCGCAGCATTGTCAAAGGGTAAAAA GTTTGACAAAAGTGGAAGCATATTAACATCCCCTTAGAGAAAGTAGTTGTTCATTAGTGT TTCTGCTGAAAATGTAAAATTTGAAAAAAAGAAATTCTGTGAAGCCCTTAAATTTAGTGT GTAGTGGAAAAATATTTTTGCACACCAAATGAATTGGTGTGTTTCCTATTCACTTTTGTA ACTGATAACACAGCATTTATTTAAGTTGTAAAACATTCAAATAAAACTTCAACTGGTTTG AAGTAACTTTTTAATTATTTGATATCCAGCAACTTTTTTTGCCAGCAATAGTATTAAACA GCTGTCAAGGAGTGCATGAATAGTGCTCTTTCTAAAATGCAACATGCAATAATAGAGTAA GTATGGTTTTAAGAAGTCAGAGCAGCAGGGGTTTGGCTTTGATGTTTATTTTACATGATG ATCATTTCAGATAAAACAGTTTTCAATTTAGAAATACAGAAACTTTTAAACAAAAAAAGT TGTGAACACTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 92-209, - strand, RNAz p=0.970547 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 92-209, - strand, RNAz p=0.970547 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 60-209, gnl|bosTau2|chr15 (3674290-3674440) | |
| 60-209, gnl|canFam2|chr21 (8371023-8370866) | |
| 60-209, gnl|danRer3|chr5 (15514585-15514429) | |
| 60-209, gnl|dasNov1|scaffold_77554 (6573-6732) | |
| 60-209, gnl|echTel1|scaffold_228194 (3964-3807) | |
| 60-209, gnl|fr1|chrUn (49729356-49729513) | |
| 60-209, gnl|galGal2|chr1 (177062554-177062395) | |
| 60-209, gnl|hg17|chr11 (95151630-95151787) | |
| 60-209, gnl|Hg17|chr11 (95151780-95151630) | |
| 60-209, gnl|loxAfr1|scaffold_14576 (6325-6168) | |
| 60-209, gnl|mm7|chr9 (13674152-13673995) | |
| 60-209, gnl|Mm7|chr9 (13674000-13674150) | |
| 60-209, gnl|monDom2|scaffold_15 (1451067-1450911) | |
| 60-209, gnl|oryCun1|scaffold_129847 (2770-2647) | |
| 60-209, gnl|panTro1|chr9 (97063950-97064107) | |
| 60-209, gnl|rheMac2|chr14 (94336593-94336750) | |
| 60-209, gnl|rn3|chr8 (10638035-10637877) | |
| 60-209, gnl|tetNig1|chr7 (5227418-5227560) | |
| 60-209, gnl|xenTro1|scaffold_123 (2158535-2158688) | |
| 305-852, gnl|bosTau2|chr15 (3682464-3682995) | |
| 305-852, gnl|Hg17|chr11 (95144465-95143928) | |
| 305-852, gnl|Mm7|chr9 (13681200-13681711) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 60-209, gnl|bosTau2|chr15 (3674290-3674440) | |
| 60-209, gnl|canFam2|chr21 (8371023-8370866) | |
| 60-209, gnl|danRer3|chr5 (15514585-15514429) | |
| 60-209, gnl|dasNov1|scaffold_77554 (6573-6732) | |
| 60-209, gnl|echTel1|scaffold_228194 (3964-3807) | |
| 60-209, gnl|fr1|chrUn (49729356-49729513) | |
| 60-209, gnl|galGal2|chr1 (177062554-177062395) | |
| 60-209, gnl|hg17|chr11 (95151630-95151787) | |
| 60-209, gnl|Hg17|chr11 (95151780-95151630) | |
| 60-209, gnl|loxAfr1|scaffold_14576 (6325-6168) | |
| 60-209, gnl|mm7|chr9 (13674152-13673995) | |
| 60-209, gnl|Mm7|chr9 (13674000-13674150) | |
| 60-209, gnl|monDom2|scaffold_15 (1451067-1450911) | |
| 60-209, gnl|oryCun1|scaffold_129847 (2770-2647) | |
| 60-209, gnl|panTro1|chr9 (97063950-97064107) | |
| 60-209, gnl|rheMac2|chr14 (94336593-94336750) | |
| 60-209, gnl|rn3|chr8 (10638035-10637877) | |
| 60-209, gnl|tetNig1|chr7 (5227418-5227560) | |
| 60-209, gnl|xenTro1|scaffold_123 (2158535-2158688) | |
| 305-852, gnl|bosTau2|chr15 (3682464-3682995) | |
| 305-852, gnl|Hg17|chr11 (95144465-95143928) | |
| 305-852, gnl|Mm7|chr9 (13681200-13681711) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.146284) | |
| thg (0.126791) |