Ss1.1-Pig3-SRG8023O15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCGAGGGCCATTTGGGGACTCCCTGATGGAGCTGGATGCAGCTGTGGGGGCCCTGATG ACAGCTGTGGGGGACCTGGGGCTGCTCGGAGAGACACTGGTCATCTTCACTGCAGACAAC GGACCCGAGACGATGCGGATGTCCCATGGCGGCTGCTCCGGCCTCCTACGATGCGGAAAG GGAACCACTTTTGAGGGAGGTGTCCGAGAGCCTGCCTTGGCTTTCTGGCCAGGCCACATT GCTCCTGGTGTGACCCACGAGCTGGCCAGCTCCCTAGACCTACTGCCCACCCTGGCGGCC CTGGCCGGGGCCCCGCTCCCCAATGTCACCCTGGATGGCGTTGACCTCAGCCCCCTGCTG TTGGGTACAGGCAAGAGTCCCCGGCGGACGCTCTTCTTCTACCCGGCCTACCCAGATGAG GTCCGAGGGGTCTTTGCTGTGCGCAGCGGGAAGTACAAGGCGCATTTCTTCACCCAGGGC TCTATCCACAGCGACACCACTGCGGACCCTGCATGCCACGCCTCTAGTCCTCTGACTGCC CATGAGCCCCCGCTGCTCTTTGACCTGTCTGAGGACCCGGGTGAGAACTACAACCTTCTG GGGGGTGTGGCTGAGGTTGCCCCAGAGGTGCTGCAGGTGCTGAAGCAACTTCAGCTGCTC AAGGCTCAGTTTGATGCTGCCGTGACCTTCAGCCCCAGCCAGATAGCCCGGGGTGAGGAC CCTGCCCTGCAGATCTGCTGTCAACCCAGCTGCACCCCGAGGCCATCCTGCTGCCACTGT CCTGAGCTCCAGCCCTGAGAGCACAGGCAGAGGCCAGCCCAGGGCCCTTTGTCCTCCCCC TCTCCCCAGCATGTGATGGTTTATCGCTGTGCTGTGAGTGGATGAAGGTGGCTCGAGAAT GCCAATAACACCAGCTGACACCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCGAGGGCCATTTGGGGACTCCCTGATGGAGCTGGATGCAGCTGTGGGGGCCCTGATG ACAGCTGTGGGGGACCTGGGGCTGCTCGGAGAGACACTGGTCATCTTCACTGCAGACAAC GGACCCGAGACGATGCGGATGTCCCATGGCGGCTGCTCCGGCCTCCTACGATGCGGAAAG GGAACCACTTTTGAGGGAGGTGTCCGAGAGCCTGCCTTGGCTTTCTGGCCAGGCCACATT GCTCCTGGTGTGACCCACGAGCTGGCCAGCTCCCTAGACCTACTGCCCACCCTGGCGGCC CTGGCCGGGGCCCCGCTCCCCAATGTCACCCTGGATGGCGTTGACCTCAGCCCCCTGCTG TTGGGTACAGGCAAGAGTCCCCGGCGGACGCTCTTCTTCTACCCGGCCTACCCAGATGAG GTCCGAGGGGTCTTTGCTGTGCGCAGCGGGAAGTACAAGGCGCATTTCTTCACCCAGGGC TCTATCCACAGCGACACCACTGCGGACCCTGCATGCCACGCCTCTAGTCCTCTGACTGCC CATGAGCCCCCGCTGCTCTTTGACCTGTCTGAGGACCCGGGTGAGAACTACAACCTTCTG GGGGGTGTGGCTGAGGTTGCCCCAGAGGTGCTGCAGGTGCTGAAGCAACTTCAGCTGCTC AAGGCTCAGTTTGATGCTGCCGTGACCTTCAGCCCCAGCCAGATAGCCCGGGGTGAGGAC CCTGCCCTGCAGATCTGCTGTCAACCCAGCTGCACCCCGAGGCCATCCTGCTGCCACTGT CCTGAGCTCCAGCCCTGAGAGCACAGGCAGAGGCCAGCCCAGGGCCCTTTGTCCTCCCCC TCTCCCCAGCATGTGATGGTTTATCGCTGTGCTGTGAGTGGATGAAGGTGGCTCGAGAAT GCCAATAACACCAGCTGACACCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 244-362, - strand, RNAz p=0.618603 | |
| 473-592, - strand, RNAz p=0.628394 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 244-362, - strand, RNAz p=0.618603 | |
| 473-592, - strand, RNAz p=0.628394 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-122, gnl|bosTau2|chr5 (75648875-75648996) | |
| 1-122, gnl|canFam2|chr10 (19680732-19680551) | |
| 1-122, gnl|danRer3|chr18 (6721103-6721284) | |
| 1-122, gnl|dasNov1|scaffold_117578 (1472-1653) | |
| 1-122, gnl|fr1|chrUn (257445154-257445335) | |
| 1-122, gnl|galGal2|chrUn (6049977-6049796) | |
| 1-122, gnl|hg17|chr22 (49355164-49355345) | |
| 1-122, gnl|Hg17|chr22 (49355284-49355163) | |
| 1-122, gnl|loxAfr1|scaffold_135279 (5111-4930) | |
| 1-122, gnl|mm7|chr15 (89557419-89557600) | |
| 1-122, gnl|Mm7|chr15 (89557539-89557418) | |
| 1-122, gnl|monDom2|scaffold_119 (1197989-1198170) | |
| 1-122, gnl|oryCun1|scaffold_92368 (434-253) | |
| 1-122, gnl|rheMac2|chr10 (94656759-94656940) | |
| 1-122, gnl|rn3|chr7 (127825805-127825986) | |
| 1-122, gnl|xenTro1|scaffold_1053 (267497-267316) | |
| 244-375, gnl|bosTau2|chr5 (75649502-75649633) | |
| 244-375, gnl|Hg17|chr22 (49354639-49354508) | |
| 244-375, gnl|Mm7|chr15 (89557016-89556885) | |
| 473-815, gnl|bosTau2|chr5 (75650084-75650425) | |
| 473-815, gnl|Hg17|chr22 (49354041-49353694) | |
| 473-815, gnl|Mm7|chr15 (89556440-89556091) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-122, gnl|bosTau2|chr5 (75648875-75648996) | |
| 1-122, gnl|canFam2|chr10 (19680732-19680551) | |
| 1-122, gnl|danRer3|chr18 (6721103-6721284) | |
| 1-122, gnl|dasNov1|scaffold_117578 (1472-1653) | |
| 1-122, gnl|fr1|chrUn (257445154-257445335) | |
| 1-122, gnl|galGal2|chrUn (6049977-6049796) | |
| 1-122, gnl|hg17|chr22 (49355164-49355345) | |
| 1-122, gnl|Hg17|chr22 (49355284-49355163) | |
| 1-122, gnl|loxAfr1|scaffold_135279 (5111-4930) | |
| 1-122, gnl|mm7|chr15 (89557419-89557600) | |
| 1-122, gnl|Mm7|chr15 (89557539-89557418) | |
| 1-122, gnl|monDom2|scaffold_119 (1197989-1198170) | |
| 1-122, gnl|oryCun1|scaffold_92368 (434-253) | |
| 1-122, gnl|rheMac2|chr10 (94656759-94656940) | |
| 1-122, gnl|rn3|chr7 (127825805-127825986) | |
| 1-122, gnl|xenTro1|scaffold_1053 (267497-267316) | |
| 244-375, gnl|bosTau2|chr5 (75649502-75649633) | |
| 244-375, gnl|Hg17|chr22 (49354639-49354508) | |
| 244-375, gnl|Mm7|chr15 (89557016-89556885) | |
| 473-815, gnl|bosTau2|chr5 (75650084-75650425) | |
| 473-815, gnl|Hg17|chr22 (49354041-49353694) | |
| 473-815, gnl|Mm7|chr15 (89556440-89556091) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cga (0.558191) | |
| nms (0.213858) | |
| ill (0.175593) | |
| nje (0.16592) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.558191) | |
| nms (0.213858) | |
| ill (0.175593) | |
| nje (0.16592) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) |