Non-Coding RNA Search

Ss1.1-Pig3-SRG8023P17.5

Sequence:


               
               CCTGTCCACGTGGTGCTCTCCATCCTCCTCTGCTGTTCTTTGGGGTCAGGGACATGATGA
GAGATGCTTTAGGCCTCACAGGTATGCCTGTCCAGGCTTAGCCACCACCCCTACTTGACC
TTTGGCTGGCCGCACTCATCAGAGAAGGTTCCTGGTGCAGAGAATGTCATGGCATCCATC
ACCAATGCCCTCTAGCATCTTCACGTATAGCTTGATGTTTAAACCAAGTCATTCTACCGA
GCATTCAGGTTTGGCTGTGGTGCAAAGAGAAAAACTAACAGAGAATATAAACCACATTCC
AGGCTGCTGTTTTCTACCCATCTACAGGCTATACTTTTACTGTATCTCTTCATACTTGAA
GCTCATTCTGCTATTTTAATATCAGGGTACAGACTTATAAGGGTGCATGTTCCCTAAAGG
TGCAAAATTACTCTCATTCCGTTTGCTCATATTGCTTCAGAATGCTCTGTTTTGGTGCTT
CGGGCTCAGCAGGTCAAAGAAGCAGTGCGAAAATGCACTGCCTGGAACACAGTCTTACAG
GAATGTTGGCAGATGGCTTGGTGTTAGGTATTGCTTCTGCTCTTTTCTCTGTACACAAGA
TTGTTACCACACTGGTCTGTCAGGCTCCCCTGGGTATCCTTCCTCACAGGGTCCCTAAAC
CCCGTGCTCTCCCCAGATGTGGGTGCAGTGCAGCTCCCTGACACCAGCGGCCTTCCTCCG
TATGCGGATCTTTCAGCCCTCAAAGAAAAATGACCTCAGGTGTAGACAGTAGGAGAATGG
AAAGAGCCATCTCGCTCAAGCAACCAACCATCCACGCAGAAAACCCTCCCAAGACAACAC
TTGAAAAGAGGAGAAAAGGAAGAAAGCTTAGCTGTAATGTTACCCTCCTCATGGTGCCCT
GAGCTGAGTGGCCTTGCTTTGGGTAGATGAAAATATAGGTCAGTTTACTCTTCTCACCCA
AAGAGGAAAACAGAAGAGTAAGTGTGTCCCCTCAAGTATGCAATCCAAGGACCACCACAA
TTTACATTAAATTCCCATCGCTAGCAACCTGTTTTACATACTAGCTCGAGTAAGGGACGC
TTAATGACCCAGGGTTTCTGAGGTCAGGGGTAGCTCTTCTTGTGTTCACCTCACTCTAAC
GTGTGGAGAGGGAGAACTACCAGTGGCGACTCTGCGGGGATGGCCAAGGTAACACGTCAG
AAATTTCAGAGGGTTACCGATCAAGAATCTTTTGGAAACTGGATGACTTCTAGGGTGCTA
GAATGCAAATTTAGGTATTTATTGTCAGATAATGGAACTCATTGTTTTTTTTTAAGAATT
GGTGTTGAAATATCACTGTCCAGTTCATTGTTTTCACTTATGCACAAGCTAAATTTGAGC
AAAAAGAAAATGGTTTGTATATTTGTCATAACTTTTGTATTTCTTACAATAAAACTATGG
GTAGCAAATAAAAATAATAAAAACAGCAATTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTCCACGTGGTGCTCTCCATCCTCCTCTGCTGTTCTTTGGGGTCAGGGACATGATGA
GAGATGCTTTAGGCCTCACAGGTATGCCTGTCCAGGCTTAGCCACCACCCCTACTTGACC
TTTGGCTGGCCGCACTCATCAGAGAAGGTTCCTGGTGCAGAGAATGTCATGGCATCCATC
ACCAATGCCCTCTAGCATCTTCACGTATAGCTTGATGTTTAAACCAAGTCATTCTACCGA
GCATTCAGGTTTGGCTGTGGTGCAAAGAGAAAAACTAACAGAGAATATAAACCACATTCC
AGGCTGCTGTTTTCTACCCATCTACAGGCTATACTTTTACTGTATCTCTTCATACTTGAA
GCTCATTCTGCTATTTTAATATCAGGGTACAGACTTATAAGGGTGCATGTTCCCTAAAGG
TGCAAAATTACTCTCATTCCGTTTGCTCATATTGCTTCAGAATGCTCTGTTTTGGTGCTT
CGGGCTCAGCAGGTCAAAGAAGCAGTGCGAAAATGCACTGCCTGGAACACAGTCTTACAG
GAATGTTGGCAGATGGCTTGGTGTTAGGTATTGCTTCTGCTCTTTTCTCTGTACACAAGA
TTGTTACCACACTGGTCTGTCAGGCTCCCCTGGGTATCCTTCCTCACAGGGTCCCTAAAC
CCCGTGCTCTCCCCAGATGTGGGTGCAGTGCAGCTCCCTGACACCAGCGGCCTTCCTCCG
TATGCGGATCTTTCAGCCCTCAAAGAAAAATGACCTCAGGTGTAGACAGTAGGAGAATGG
AAAGAGCCATCTCGCTCAAGCAACCAACCATCCACGCAGAAAACCCTCCCAAGACAACAC
TTGAAAAGAGGAGAAAAGGAAGAAAGCTTAGCTGTAATGTTACCCTCCTCATGGTGCCCT
GAGCTGAGTGGCCTTGCTTTGGGTAGATGAAAATATAGGTCAGTTTACTCTTCTCACCCA
AAGAGGAAAACAGAAGAGTAAGTGTGTCCCCTCAAGTATGCAATCCAAGGACCACCACAA
TTTACATTAAATTCCCATCGCTAGCAACCTGTTTTACATACTAGCTCGAGTAAGGGACGC
TTAATGACCCAGGGTTTCTGAGGTCAGGGGTAGCTCTTCTTGTGTTCACCTCACTCTAAC
GTGTGGAGAGGGAGAACTACCAGTGGCGACTCTGCGGGGATGGCCAAGGTAACACGTCAG
AAATTTCAGAGGGTTACCGATCAAGAATCTTTTGGAAACTGGATGACTTCTAGGGTGCTA
GAATGCAAATTTAGGTATTTATTGTCAGATAATGGAACTCATTGTTTTTTTTTAAGAATT
GGTGTTGAAATATCACTGTCCAGTTCATTGTTTTCACTTATGCACAAGCTAAATTTGAGC
AAAAAGAAAATGGTTTGTATATTTGTCATAACTTTTGTATTTCTTACAATAAAACTATGG
GTAGCAAATAAAAATAATAAAAACAGCAATTTTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               587-702, - strand, RNAz p=0.967455

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               587-702, - strand, RNAz p=0.967455

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1473, gnl|bosTau2|chr4 (4255665-4254175)
               

               
               1-1473, gnl|Hg17|chr7 (91880408-91878998)
               

               
               1-1473, gnl|Mm7|chr5 (3535656-3537024)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1473, gnl|bosTau2|chr4 (4255665-4254175)
               

               
               1-1473, gnl|Hg17|chr7 (91880408-91878998)
               

               
               1-1473, gnl|Mm7|chr5 (3535656-3537024)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               pro (0.512033)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               med (0.232504)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               med (0.232504)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

	1-1473, gnl\|bosTau2\|chr4 (4255665-4254175)
	1-1473, gnl\|Hg17\|chr7 (91880408-91878998)
	1-1473, gnl\|Mm7\|chr5 (3535656-3537024)

	pro (0.512033)
	fce (0.271592)
	thg (0.253582)
	med (0.232504)
	sag (0.182715)
	fhi (0.169578)
	cki (0.165235)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	cst (0.140036)
	ute (0.132784)
	kid (0.129735)
	bla (0.124347)
	clu (0.119646)