Ss1.1-Pig3-SRG8024A01.3
|
TTTGCAAAGAGGCAGCAGACATGATCCTGGTGGATGACGATTTCCAGACTATCATGTCTG
CAATTGAAGAGGGTAAAGGGATTTATAATAACATTAAAAATTTTGTTAGATTCCAGCTGA
GCACGAGTATAGCAGCATTAACTTTAATCTCATTGGCCACATTAATGAACTTTCCCAATC
CTCTCAATGCCATGCAGATTCTGTGGATCAATATTATAATGGATGGACCTCCAGCTCAGA
GCCTTGGAGTAGAACCAGTGGATAAAGATGTCATCCGTAAACCTCCACGCAACTGGAAGG
ACAGCATCTTGACCAAAAACCTGATCCTTAAAATACTTGTTTCCTCAATAATCATTGTTT
GCGGGACTTTGTTTGTCTTCTGGCGGGAGCTGCGAGACAATGTGATAACACCTCGGGACA
CAACGATGACCTTCACATGCTTTGTGTTTTTTGACATGTTCAATGCACTGAGTTCCAGAT
CCCAGACCAAATCTGTGTTTGAGATTGGACTCTGCAGTAATAAAATGTTTTGCTACGCAG
TTCTTGGATCCATCATGGGACAGTTATTAGTTATTTACTTTCCTCCACTTCAGAAAGTTT
TTCAGACCGAGAGCCTAAGTGTACTGGATTTGCTGTTTCTTCTGGGTCTCACTTCATCAG
TGTGCATAGTGGCAGAGATTATAAAGAAGGTTGAAAGGAGCCGGGAGAAGATCCAGAAGC
CTGTTAGTTCAACATCGTCGTCTTTTCTTGAAGTATGATGCATATTGCATTCTTTAATTT
GCAAACTAGGAATTGCAGCCTAAGGATCATTTAGAAGGGCAAGTTCAAGAGAAAAATGAA
GATCTGAGAACGTTTGAAGTTTTCATTGACTGAAAATGAGCGTGAAATACTTGATTTGAG
ACTTTAATCTGTTGGCAGTCCCAAATGAAATTATGCAACTTTGATAACATATTCCTTGAT
TTAAATTGGCTTTTGCGATTGAGTGGAACTTTATAAAATGTATGAGCAGTTATTTAATTT
AAAAAAAAAAGGTAAAACCTGAACCACCTTCTGCACTTAAAGAGGTCTAACAGTTCAGTA
CACTATCTATCTTAGATAGATAATAATTTTTTTTAATTTTTAAATATTGTACTATTTATG
GTTATGGTGGTGGGGCTTTTTTCTAATAACACAAATAAATTTAATCATTTCAAAGGCATT
CTATTTGGTTTAGAAGTTGATTCCCAGGAGTGCCATATTTCAGTTATTGTATTTCCTTTT
CTCTGCAATGTAAGCAGCTCAGCTACCTTGTGTTACCATTTTTTTATCTGAAGTTTTTTG
CACAGGATGTGACCACTGTCAGATCACTATTCTTTTCTTTCTTTTTGTGATTGAAAAGCC
TATACTGCGATTTGAAGTAAATGTTTGCTTTTCTTAGTAAGTGTAAATGGTTGCTTTTTT
TTCTTTTTCTTTTTTTTCTCTTTTGGTATGAGTCTTTGGGCTAGCAGAATTAATAACAGG
GCTGTCAAATGGCATTCTAGGTAGGGTGCTGTATCTGTACTTAACACTGGGTTGTGGAGT
CAAAAATATTTAAGACTGATTGGGCTGAAATTTATAGCAGATTTTATTAACGTGTTATGC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTGCAAAGAGGCAGCAGACATGATCCTGGTGGATGACGATTTCCAGACTATCATGTCTG
CAATTGAAGAGGGTAAAGGGATTTATAATAACATTAAAAATTTTGTTAGATTCCAGCTGA
GCACGAGTATAGCAGCATTAACTTTAATCTCATTGGCCACATTAATGAACTTTCCCAATC
CTCTCAATGCCATGCAGATTCTGTGGATCAATATTATAATGGATGGACCTCCAGCTCAGA
GCCTTGGAGTAGAACCAGTGGATAAAGATGTCATCCGTAAACCTCCACGCAACTGGAAGG
ACAGCATCTTGACCAAAAACCTGATCCTTAAAATACTTGTTTCCTCAATAATCATTGTTT
GCGGGACTTTGTTTGTCTTCTGGCGGGAGCTGCGAGACAATGTGATAACACCTCGGGACA
CAACGATGACCTTCACATGCTTTGTGTTTTTTGACATGTTCAATGCACTGAGTTCCAGAT
CCCAGACCAAATCTGTGTTTGAGATTGGACTCTGCAGTAATAAAATGTTTTGCTACGCAG
TTCTTGGATCCATCATGGGACAGTTATTAGTTATTTACTTTCCTCCACTTCAGAAAGTTT
TTCAGACCGAGAGCCTAAGTGTACTGGATTTGCTGTTTCTTCTGGGTCTCACTTCATCAG
TGTGCATAGTGGCAGAGATTATAAAGAAGGTTGAAAGGAGCCGGGAGAAGATCCAGAAGC
CTGTTAGTTCAACATCGTCGTCTTTTCTTGAAGTATGATGCATATTGCATTCTTTAATTT
GCAAACTAGGAATTGCAGCCTAAGGATCATTTAGAAGGGCAAGTTCAAGAGAAAAATGAA
GATCTGAGAACGTTTGAAGTTTTCATTGACTGAAAATGAGCGTGAAATACTTGATTTGAG
ACTTTAATCTGTTGGCAGTCCCAAATGAAATTATGCAACTTTGATAACATATTCCTTGAT
TTAAATTGGCTTTTGCGATTGAGTGGAACTTTATAAAATGTATGAGCAGTTATTTAATTT
AAAAAAAAAAGGTAAAACCTGAACCACCTTCTGCACTTAAAGAGGTCTAACAGTTCAGTA
CACTATCTATCTTAGATAGATAATAATTTTTTTTAATTTTTAAATATTGTACTATTTATG
GTTATGGTGGTGGGGCTTTTTTCTAATAACACAAATAAATTTAATCATTTCAAAGGCATT
CTATTTGGTTTAGAAGTTGATTCCCAGGAGTGCCATATTTCAGTTATTGTATTTCCTTTT
CTCTGCAATGTAAGCAGCTCAGCTACCTTGTGTTACCATTTTTTTATCTGAAGTTTTTTG
CACAGGATGTGACCACTGTCAGATCACTATTCTTTTCTTTCTTTTTGTGATTGAAAAGCC
TATACTGCGATTTGAAGTAAATGTTTGCTTTTCTTAGTAAGTGTAAATGGTTGCTTTTTT
TTCTTTTTCTTTTTTTTCTCTTTTGGTATGAGTCTTTGGGCTAGCAGAATTAATAACAGG
GCTGTCAAATGGCATTCTAGGTAGGGTGCTGTATCTGTACTTAACACTGGGTTGTGGAGT
CAAAAATATTTAAGACTGATTGGGCTGAAATTTATAGCAGATTTTATTAACGTGTTATGC |
|
gi|3646134|emb|CAA09425.1| |
Protein identifier
|
gi|3646134|emb|CAA09425.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
240-389, gnl|bosTau2|chr1 (97151223-97151372) |
|
240-389, gnl|canFam2|chr23 (31261777-31261942) |
|
240-389, gnl|danRer3|chr16 (38611415-38611256) |
|
240-389, gnl|dasNov1|scaffold_10671 (4249-4413) |
|
240-389, gnl|echTel1|scaffold_217830 (3052-2881) |
|
240-389, gnl|fr1|chrUn (260046578-260046418) |
|
240-389, gnl|galGal2|chr2 (40816160-40816325) |
|
240-389, gnl|hg17|chr3 (132199138-132199303) |
|
240-389, gnl|Hg17|chr3 (132199146-132199295) |
|
240-389, gnl|loxAfr1|scaffold_127349 (1120-955) |
|
240-389, gnl|mm7|chr9 (105136195-105136030) |
|
240-389, gnl|Mm7|chr9 (105136185-105136036) |
|
240-389, gnl|monDom2|scaffold_7 (69900463-69900298) |
|
240-389, gnl|oryCun1|scaffold_194157 (29017-28852) |
|
240-389, gnl|panTro1|chr2 (134246350-134246515) |
|
240-389, gnl|rheMac2|chr2 (156693293-156693128) |
|
240-389, gnl|rn3|chr8 (110542647-110542482) |
|
240-389, gnl|tetNig1|chrUn_random (47033907-47033756) |
|
240-389, gnl|xenTro1|scaffold_1296 (143075-142910) |
| |
|
627-1620, gnl|bosTau2|chr1 (97154876-97155867) |
|
627-1620, gnl|Hg17|chr3 (132202761-132203718) |
|
627-1620, gnl|Mm7|chr9 (105130682-105129702) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
240-389, gnl|bosTau2|chr1 (97151223-97151372) |
|
240-389, gnl|canFam2|chr23 (31261777-31261942) |
|
240-389, gnl|danRer3|chr16 (38611415-38611256) |
|
240-389, gnl|dasNov1|scaffold_10671 (4249-4413) |
|
240-389, gnl|echTel1|scaffold_217830 (3052-2881) |
|
240-389, gnl|fr1|chrUn (260046578-260046418) |
|
240-389, gnl|galGal2|chr2 (40816160-40816325) |
|
240-389, gnl|hg17|chr3 (132199138-132199303) |
|
240-389, gnl|Hg17|chr3 (132199146-132199295) |
|
240-389, gnl|loxAfr1|scaffold_127349 (1120-955) |
|
240-389, gnl|mm7|chr9 (105136195-105136030) |
|
240-389, gnl|Mm7|chr9 (105136185-105136036) |
|
240-389, gnl|monDom2|scaffold_7 (69900463-69900298) |
|
240-389, gnl|oryCun1|scaffold_194157 (29017-28852) |
|
240-389, gnl|panTro1|chr2 (134246350-134246515) |
|
240-389, gnl|rheMac2|chr2 (156693293-156693128) |
|
240-389, gnl|rn3|chr8 (110542647-110542482) |
|
240-389, gnl|tetNig1|chrUn_random (47033907-47033756) |
|
240-389, gnl|xenTro1|scaffold_1296 (143075-142910) |
| |
|
627-1620, gnl|bosTau2|chr1 (97154876-97155867) |
|
627-1620, gnl|Hg17|chr3 (132202761-132203718) |
|
627-1620, gnl|Mm7|chr9 (105130682-105129702) |
|
tra (1.23092) |
|
kid (0.908147) |
|
sug (0.509165) |
|
liv (0.438853) |
|
ssp (0.406559) |
|
ste (0.405625) |
|
ret (0.3862) |
|
mgm (0.360685) |
|
ton (0.351) |
|
vin (0.332557) |
|
fco (0.314416) |
|
bfe (0.299715) |
|
cte (0.29274) |
|
pla (0.267344) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
cty (0.20816) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
mga (0.160205) |
|
isp (0.150376) |
|
fat (0.147427) |
|
lin (0.145603) |
|
spl (0.143184) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
bla (0.124347) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
tra (1.23092) |
|
kid (0.908147) |
|
sug (0.509165) |
|
liv (0.438853) |
|
ssp (0.406559) |
|
ste (0.405625) |
|
ret (0.3862) |
|
mgm (0.360685) |
|
ton (0.351) |
|
vin (0.332557) |
|
fco (0.314416) |
|
bfe (0.299715) |
|
cte (0.29274) |
|
pla (0.267344) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
cty (0.20816) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
mga (0.160205) |
|
isp (0.150376) |
|
fat (0.147427) |
|
lin (0.145603) |
|
spl (0.143184) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
bla (0.124347) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
