Non-Coding RNA Search

Ss1.1-Pig3-SRG8024A16.3

Sequence:


               
               CAAACCTCCCGAAGAGTGGTTGCCGGTCACCAGCTCCTGCCACTCAGGGCACCTTGGTCG
CGGGACCTTCAGAACTCTCTTCGCTCACAAGCCATCGGAAAGCCAACATGTTGGTGTTAC
TGGCTGGTATCTTTGTGGTCCACATCGCCACTGTCGTCATGCTGTTCGTTTGCACCATTG
CCAATGTCTGGGTGGTCTCAGATGCGGGACAAGGATCTGTCGGTCTTTGGAAAAACTGTA
CCAGTGCTGGCTGTACTGATACCCTGTTATACGGCGGTGAAGATGCCCTCAAGTCGGTGC
AGGCCTTCATGATCCTGTCTATCATCTTCTCTGTCGTCTCCCTCGTGGTCTTTGTGTTCC
AGCTCTTCACCATGGAGAAAGGCAACCGCTTCTTCCTCTCGGGAGCCACCATGCTGGTGT
GCTGGCTGTGCATCATGGTGGGGGCCTCCATCTATACTCATCATTATGCCAACAGTTCTA
AAAACCAATACTCGGCGAGTCACCATGGCTATTCCTTCATCCTCGCCTGGATCTGCTTCT
GCTTCAGCTTCATCATCGGCGTTCTCTATCTGGTCCTGAGAAAGAAATAAGGCAGCAGCG
TTACTGGGAATCTGGGGGGTGGGGAGGAGGGAGCCCTTGAATCTGGGAGGGGAGTAGAAG
TCACTAAGCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACCTCCCGAAGAGTGGTTGCCGGTCACCAGCTCCTGCCACTCAGGGCACCTTGGTCG
CGGGACCTTCAGAACTCTCTTCGCTCACAAGCCATCGGAAAGCCAACATGTTGGTGTTAC
TGGCTGGTATCTTTGTGGTCCACATCGCCACTGTCGTCATGCTGTTCGTTTGCACCATTG
CCAATGTCTGGGTGGTCTCAGATGCGGGACAAGGATCTGTCGGTCTTTGGAAAAACTGTA
CCAGTGCTGGCTGTACTGATACCCTGTTATACGGCGGTGAAGATGCCCTCAAGTCGGTGC
AGGCCTTCATGATCCTGTCTATCATCTTCTCTGTCGTCTCCCTCGTGGTCTTTGTGTTCC
AGCTCTTCACCATGGAGAAAGGCAACCGCTTCTTCCTCTCGGGAGCCACCATGCTGGTGT
GCTGGCTGTGCATCATGGTGGGGGCCTCCATCTATACTCATCATTATGCCAACAGTTCTA
AAAACCAATACTCGGCGAGTCACCATGGCTATTCCTTCATCCTCGCCTGGATCTGCTTCT
GCTTCAGCTTCATCATCGGCGTTCTCTATCTGGTCCTGAGAAAGAAATAAGGCAGCAGCG
TTACTGGGAATCTGGGGGGTGGGGAGGAGGGAGCCCTTGAATCTGGGAGGGGAGTAGAAG
TCACTAAGCCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57106979|ref|XP_543803.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57106979|ref|XP_543803.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               68-187, gnl|bosTau2|chr5 (56580890-56580771)
               

               
               68-187, gnl|Hg17|chr12 (13255665-13255791)
               

               
               68-187, gnl|Mm7|chr6 (135391495-135391612)
               


               
               424-672, gnl|bosTau2|chr5 (56577520-56577270)
               

               
               424-672, gnl|Hg17|chr12 (13258735-13258975)
               

               
               424-672, gnl|Mm7|chr6 (135395296-135395553)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-187, gnl|bosTau2|chr5 (56580890-56580771)
               

               
               68-187, gnl|Hg17|chr12 (13255665-13255791)
               

               
               68-187, gnl|Mm7|chr6 (135391495-135391612)
               


               
               424-672, gnl|bosTau2|chr5 (56577520-56577270)
               

               
               424-672, gnl|Hg17|chr12 (13258735-13258975)
               

               
               424-672, gnl|Mm7|chr6 (135395296-135395553)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	68-187, gnl\|bosTau2\|chr5 (56580890-56580771)
	68-187, gnl\|Hg17\|chr12 (13255665-13255791)
	68-187, gnl\|Mm7\|chr6 (135391495-135391612)

	424-672, gnl\|bosTau2\|chr5 (56577520-56577270)
	424-672, gnl\|Hg17\|chr12 (13258735-13258975)
	424-672, gnl\|Mm7\|chr6 (135395296-135395553)

	nlu (0.191681)
	nep (0.183925)
	nca (0.136874)
	eep (0.122564)
	eru (0.120048)