Ss1.1-Pig3-SRG8024E21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTATCTTGGCAGCCACCTGTCTTGGCCGAGAGAAAGGCATTATCACCAAGTATACACTTC TGTATAGGGATATCAACACCCCTCTTCTTCCAATGGAGCAGCTTATTATTCCAGCTGACA CCACTATGACACTCAGTGGCTTAAAACCAGATACCACATATGATGTAAAAGTACGTGCTC ACACAAGCAAAGGGCCCGGGCCATATAGTCCCAGTGTCCAGTTCAAGACACTGCCTGTGG ATCAAGTGTTTGCAAAAAATTTTCATGTCAAAGCAGTAATGAAGACATCAGTGCTACTGT CGTGGGAGATTCCGGAGAATTATAATTCTGCCATGCCTTTCAAAATTCTTTATGATGACG GGAAAATGGTGGAAGAAGTGGATGGCCGAGCTACACAGAAGTTGATCGTCAACCTGAAGC CTGAGAAGTCCTATTCATTTGTGTTGACAAATCGTGGCAACAGTGCTGGTGGACTACAGC ACAGAGTGACAGCAAAGACTGCTCCAGATGTGTTACGTACCAAGCCTGCCTTCATTGGGA AGACCAACTTGGATGGCATGATTACCGTGCAATTGCCCGAAGTACCTGCCAATGAGAATA TAAAGTAAGTTGATTGAAGAGTTAGGGCTGAAGGTTAGAAATGCACGTGAGCAAGAAAAG AAAGTTAAATCTCGATATGATAGTGGTTAATAAAAAATATATTACTGTATATGGAATAAA AAATTCTTCAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTATCTTGGCAGCCACCTGTCTTGGCCGAGAGAAAGGCATTATCACCAAGTATACACTTC TGTATAGGGATATCAACACCCCTCTTCTTCCAATGGAGCAGCTTATTATTCCAGCTGACA CCACTATGACACTCAGTGGCTTAAAACCAGATACCACATATGATGTAAAAGTACGTGCTC ACACAAGCAAAGGGCCCGGGCCATATAGTCCCAGTGTCCAGTTCAAGACACTGCCTGTGG ATCAAGTGTTTGCAAAAAATTTTCATGTCAAAGCAGTAATGAAGACATCAGTGCTACTGT CGTGGGAGATTCCGGAGAATTATAATTCTGCCATGCCTTTCAAAATTCTTTATGATGACG GGAAAATGGTGGAAGAAGTGGATGGCCGAGCTACACAGAAGTTGATCGTCAACCTGAAGC CTGAGAAGTCCTATTCATTTGTGTTGACAAATCGTGGCAACAGTGCTGGTGGACTACAGC ACAGAGTGACAGCAAAGACTGCTCCAGATGTGTTACGTACCAAGCCTGCCTTCATTGGGA AGACCAACTTGGATGGCATGATTACCGTGCAATTGCCCGAAGTACCTGCCAATGAGAATA TAAAGTAAGTTGATTGAAGAGTTAGGGCTGAAGGTTAGAAATGCACGTGAGCAAGAAAAG AAAGTTAAATCTCGATATGATAGTGGTTAATAAAAAATATATTACTGTATATGGAATAAA AAATTCTTCAGA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 39-246, - strand, RNAz p=0.576051 | |
| 76-192, - strand, RNAz p=0.656368 | |
| 459-578, - strand, RNAz p=0.807681 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 39-246, - strand, RNAz p=0.576051 | |
| 76-192, - strand, RNAz p=0.656368 | |
| 459-578, - strand, RNAz p=0.807681 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 1-246, gnl|bosTau2|chr8 (16003319-16003565) | |
| 1-246, gnl|canFam2|chr11 (32283378-32283723) | |
| 1-246, gnl|danRer3|chr6 (21456389-21456044) | |
| 1-246, gnl|dasNov1|scaffold_881 (139304-138959) | |
| 1-246, gnl|echTel1|scaffold_307615 (6288-6605) | |
| 1-246, gnl|fr1|chrUn (136272949-136273294) | |
| 1-246, gnl|galGal2|chrZ (12899786-12900131) | |
| 1-246, gnl|hg17|chr9 (8475757-8476102) | |
| 1-246, gnl|Hg17|chr9 (8476008-8475762) | |
| 1-246, gnl|mm7|chr4 (75489731-75490076) | |
| 1-246, gnl|Mm7|chr4 (75489982-75489736) | |
| 1-246, gnl|monDom2|scaffold_5 (107866776-107866431) | |
| 1-246, gnl|oryCun1|scaffold_199573 (53455-53110) | |
| 1-246, gnl|panTro1|chr11 (8410264-8410609) | |
| 1-246, gnl|rheMac2|chr15 (68657486-68657141) | |
| 1-246, gnl|rn3|chr5 (94132584-94132239) | |
| 1-246, gnl|tetNig1|chrUn_random (56442848-56442503) | |
| 1-246, gnl|xenTro1|scaffold_52 (1292837-1292492) | |
| 340-698, gnl|bosTau2|chr8 (16004935-16005291) | |
| 340-698, gnl|Hg17|chr9 (8474383-8474034) | |
| 340-698, gnl|Mm7|chr4 (75488306-75487971) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-246, gnl|bosTau2|chr8 (16003319-16003565) | |
| 1-246, gnl|canFam2|chr11 (32283378-32283723) | |
| 1-246, gnl|danRer3|chr6 (21456389-21456044) | |
| 1-246, gnl|dasNov1|scaffold_881 (139304-138959) | |
| 1-246, gnl|echTel1|scaffold_307615 (6288-6605) | |
| 1-246, gnl|fr1|chrUn (136272949-136273294) | |
| 1-246, gnl|galGal2|chrZ (12899786-12900131) | |
| 1-246, gnl|hg17|chr9 (8475757-8476102) | |
| 1-246, gnl|Hg17|chr9 (8476008-8475762) | |
| 1-246, gnl|mm7|chr4 (75489731-75490076) | |
| 1-246, gnl|Mm7|chr4 (75489982-75489736) | |
| 1-246, gnl|monDom2|scaffold_5 (107866776-107866431) | |
| 1-246, gnl|oryCun1|scaffold_199573 (53455-53110) | |
| 1-246, gnl|panTro1|chr11 (8410264-8410609) | |
| 1-246, gnl|rheMac2|chr15 (68657486-68657141) | |
| 1-246, gnl|rn3|chr5 (94132584-94132239) | |
| 1-246, gnl|tetNig1|chrUn_random (56442848-56442503) | |
| 1-246, gnl|xenTro1|scaffold_52 (1292837-1292492) | |
| 340-698, gnl|bosTau2|chr8 (16004935-16005291) | |
| 340-698, gnl|Hg17|chr9 (8474383-8474034) | |
| 340-698, gnl|Mm7|chr4 (75488306-75487971) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) |