Non-Coding RNA Search

Ss1.1-Pig3-SRG8024G04.3

Sequence:


               
               CATGAATCTTAAAACTCAATAGCATTTAAGTATGTTAATTAAGTCAAAGATTTTCATATT
AATACAAAAATTAAATTTTTCCTTACAAAAATTTCCATTTCTGGAAAGTTGGATCAGTCC
TGAGTAAGACTATATCATTAATAATTATATAATTCAGTAAAAACAAAAACTTTACTTGGC
ATCGAGTGGGACTTGGAGTCAAAAGATCTGGTTTTATGGTCCATTTTGACCAGTCCTCTG
CAGTGGATCTCTTTAAAGGTCCTGGAACCTTTGAGCCTCAGTTACCTCACTTGTAAATTG
GTGATAATACCTACCTCACAGGGTTGTTGTGAGGATTCAATGAGATAATGTATGTGGAAA
GCACTTTGTAAATTGTAAAGTGCTACACAAATGTTAGTTGTTGTTGTTGTATCTGAGATG
TCTTAAATTTTTTTTTTTCCTTCAGAAATAGTCTAATAAACCTCTAGGGCTTTTCTGTTA
AAGTATATTAGTTGGTAAACCTTTGAATAAACAGTTTATTACAATATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGAATCTTAAAACTCAATAGCATTTAAGTATGTTAATTAAGTCAAAGATTTTCATATT
AATACAAAAATTAAATTTTTCCTTACAAAAATTTCCATTTCTGGAAAGTTGGATCAGTCC
TGAGTAAGACTATATCATTAATAATTATATAATTCAGTAAAAACAAAAACTTTACTTGGC
ATCGAGTGGGACTTGGAGTCAAAAGATCTGGTTTTATGGTCCATTTTGACCAGTCCTCTG
CAGTGGATCTCTTTAAAGGTCCTGGAACCTTTGAGCCTCAGTTACCTCACTTGTAAATTG
GTGATAATACCTACCTCACAGGGTTGTTGTGAGGATTCAATGAGATAATGTATGTGGAAA
GCACTTTGTAAATTGTAAAGTGCTACACAAATGTTAGTTGTTGTTGTTGTATCTGAGATG
TCTTAAATTTTTTTTTTTCCTTCAGAAATAGTCTAATAAACCTCTAGGGCTTTTCTGTTA
AAGTATATTAGTTGGTAAACCTTTGAATAAACAGTTTATTACAATATAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               224-419, - strand, RNAz p=0.975452

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               224-419, - strand, RNAz p=0.975452

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               35-528, gnl|bosTau2|chr1 (89176831-89177330)
               

               
               35-528, gnl|Hg17|chr21 (39590723-39590233)
               

               
               35-528, gnl|Mm7|chr16 (96403600-96403161)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-528, gnl|bosTau2|chr1 (89176831-89177330)
               

               
               35-528, gnl|Hg17|chr21 (39590723-39590233)
               

               
               35-528, gnl|Mm7|chr16 (96403600-96403161)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               ece (0.229305)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ece (0.229305)

	35-528, gnl\|bosTau2\|chr1 (89176831-89177330)
	35-528, gnl\|Hg17\|chr21 (39590723-39590233)
	35-528, gnl\|Mm7\|chr16 (96403600-96403161)