Non-Coding RNA Search

Ss1.1-Pig3-SRG8024G07.3

Sequence:


               
               CACCAGCCATGAGGCCAGACTTCCCTTCCCCAGCCATGGGGCAAGCTCCCTCACGTCTAC
CCCCACCCTGGTAGATCTCAGCCTTGGTGGAATTGGGAATCATACCCAGGTAAGGAGTGT
GTTCTTTATTTGGAGCCGAGAGAAAGATTCTAGATGTGTGGGGGTTTGAGGAAAAACCTT
CCTTGAGCCATCCTTCCTCCCAGGAGGGCCCCAACCCTGCCTGCTCCTGCCCTTGTTGGC
TTGGAGGCTGTGATGCAAAAGGAAAATCTCCTGATTCCAGCCCCCCAGCTGTGCATCCCA
TGAACCCCTGCCTGCGTTTCAGCACTTGGATGAACACAGATCCACGGACCCCTCTCCTGT
ATATCTTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAC
ACATGCACGCAGGCCCCAGACAGATGGGCATAAACACCTTGAGCCCCACCCTCTGCGTCC
TGTGTGGGAACAAAGCACGACCCCCTTGGCTGAGCCCCTCCCCCACTGCATGCATCCATA
TGGAGCATCTCTGTTGTTTTTATTAACTTCAGAATAAAGTCTCGTTTCAGTGCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCAGCCATGAGGCCAGACTTCCCTTCCCCAGCCATGGGGCAAGCTCCCTCACGTCTAC
CCCCACCCTGGTAGATCTCAGCCTTGGTGGAATTGGGAATCATACCCAGGTAAGGAGTGT
GTTCTTTATTTGGAGCCGAGAGAAAGATTCTAGATGTGTGGGGGTTTGAGGAAAAACCTT
CCTTGAGCCATCCTTCCTCCCAGGAGGGCCCCAACCCTGCCTGCTCCTGCCCTTGTTGGC
TTGGAGGCTGTGATGCAAAAGGAAAATCTCCTGATTCCAGCCCCCCAGCTGTGCATCCCA
TGAACCCCTGCCTGCGTTTCAGCACTTGGATGAACACAGATCCACGGACCCCTCTCCTGT
ATATCTTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAC
ACATGCACGCAGGCCCCAGACAGATGGGCATAAACACCTTGAGCCCCACCCTCTGCGTCC
TGTGTGGGAACAAAGCACGACCCCCTTGGCTGAGCCCCTCCCCCACTGCATGCATCCATA
TGGAGCATCTCTGTTGTTTTTATTAACTTCAGAATAAAGTCTCGTTTCAGTGCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8R020_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8R020_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-366, gnl|bosTau2|chr2 (74159925-74160288)
               

               
               3-366, gnl|Hg17|chr1 (33028823-33029139)
               

               
               3-366, gnl|Mm7|chr4 (128556787-128556445)
               


               
               388-594, gnl|bosTau2|chr2 (74160275-74160477)
               

               
               388-594, gnl|Hg17|chr1 (33029123-33029340)
               

               
               388-594, gnl|Mm7|chr4 (128556458-128556222)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-366, gnl|bosTau2|chr2 (74159925-74160288)
               

               
               3-366, gnl|Hg17|chr1 (33028823-33029139)
               

               
               3-366, gnl|Mm7|chr4 (128556787-128556445)
               


               
               388-594, gnl|bosTau2|chr2 (74160275-74160477)
               

               
               388-594, gnl|Hg17|chr1 (33029123-33029340)
               

               
               388-594, gnl|Mm7|chr4 (128556458-128556222)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	3-366, gnl\|bosTau2\|chr2 (74159925-74160288)
	3-366, gnl\|Hg17\|chr1 (33028823-33029139)
	3-366, gnl\|Mm7\|chr4 (128556787-128556445)

	388-594, gnl\|bosTau2\|chr2 (74160275-74160477)
	388-594, gnl\|Hg17\|chr1 (33029123-33029340)
	388-594, gnl\|Mm7\|chr4 (128556458-128556222)