Non-Coding RNA Search

Ss1.1-Pig3-SRG8024G09.3.5

Sequence:


               
               TGAGAGCAAGGGGCTGTTAGCGCTGTGTTACGAGAGAGGGACAGCAGTCTCTGAGGCCAG
GTTATCTTGAAACCAGGTCATGTCTTGTGATCAGTGCAGCAGCTTCCTGAAGTTAGCACC
TTCTTGAGCCAGACAAGATCTGTTAGGTCTGTCTCTGGGCATCTGACTTGGTTCAGTCCA
CAGTAGGTCTGGCTGAGCCGAGGCCCCTGCGTGCTTTCTCGTCCTTCCGCTGTCTGGGAC
CAGAGATGCCAGGTAACACTGCCGCATCCGTGCCGGGGCAGTGCCCAGTGGCAGCCTGCA
CCGCGCCAGGCACAGTAGAGGCCTGAGCTGCTTTTCCATCAGGGACACCCCGAGGCAGTC
TGGTGGGAGGGTCGGCACCTATCCCCTGGTGGCGTCTAGCAAGAGGAAAAGTCTGGAGGC
TTGGATCAGCCTTTGTCAGCCTTGATCCAGCAGTGCCCCTGGCTTGGCCCTCTCACACAG
ACTCCCTCTGGGAGCAGCTGACTAGCCAGCATCATCCATGAGAGGACATGGCTGTGCAGG
AGAGGGGCCTGTTCCCCTGTGTGTAAAGCTGCCAGGGTTACAGAGAACTCGCTGCTCCAG
CAGCCAGGCAGGAGTAGGCATTCGCTTGCCATGTGAAGGGAAAGGATGTCAGCTATAGCA
TTAAGATGATGGATCCATCTTCTCCCAGCCCGAATGACTATCAGTGTGATGAAAACGAGC
GCCTGGTAAAAGCTGGAAATCCTCACAGGGCCCGAGCAGCGAAGCCTCCCCCTGCCTGCG
CCTTCCCAGGGACAGTCAGGAGCGCCTCCTGTGCGGCCATGGCTTCCCTTGCACATGAGC
CTGTGGTTAAGACCGGGTCTGTGGCGCAGAGACGTCTTCCCCGTGTCACTTCAGTGTTGA
GAATCGGTCTGCTGATTGTCTTTTCTGAAGACTGAAACTCTCCATCTCCCACCTCCAGGG
AGCTGGTTTTTTGGCCTTGGTTCTTCATGGCGACATCATGTCCCGTGATGCGCCTTCCAT
TGCTCACAAGGGAGATGCAGGTTGAATCCCTGATTCCATGTAAGGCTCACGATGGCATTT
TTCTCATCTCTCTGTATCTTCCCGGGGGAGAGGACTTGCTCAGGGAGAGGGGATGTTTGG
AAACATGTCACTGGTTGCTCCACTGCTCTCGCACACCTCCAGGCTCGTAGCGGCAGCCCC
GTTCTCTGTCACTCTGTCCCACAGCCTCGTCACTGGTGTGTCCTTTCAGTTGAATGGCCT
GTTTAACTGGATCACACCATTGAATCACATGTGTGCAAAGAAAAGCCATGGAGTAAGAGA
CGCTTGAAACACGTGGAGGAGGAAAACAGGTGGCTTTTTCTTCTTTCTTGACATTGAGTT
CTACCAGATGCATTTAGGGGAAATACGGCACTTTGTCTTAAGAAAAAAGAAGGAATGAAA
CCTACAGCAAACCTTTCCTGACTGTCAGCTCTCCTAATCCCACAGCAGCCTTTAAGTCAT
GTGAGGTGAGTTAGGTCTTGGAAGCACTACAGCAACCTGTGCCCCTTATTCTGTAACAGG
ATACCCGGCTCCAGAGCTATGCCTCTGGGCAGCAGAACTTAACTGCGGTTTCTTTTAATA
ATCGTTAAGCCATATCACCTAAGGTTTTCGGCTTGTTTGAGATGTGAATTTGTTTTATAG
ATTATAAATATACATATACAGTGTATGTATAAAGCAGAATGCCTGTCCCTCCTGATTATT
TTTTGTACCATATTGTAAATTATATTATTTATTCTTTACCAATTTTGGGAATAAAAGGTG
TTTGGTTATTTAATATAATAAACAAAAGCTGTTAAACTTCTTATGTTTAAATTTCCAGTT
CAACTTGTAAATCTGTTTTTATTATTGTGCATAAATACATACTAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGAGCAAGGGGCTGTTAGCGCTGTGTTACGAGAGAGGGACAGCAGTCTCTGAGGCCAG
GTTATCTTGAAACCAGGTCATGTCTTGTGATCAGTGCAGCAGCTTCCTGAAGTTAGCACC
TTCTTGAGCCAGACAAGATCTGTTAGGTCTGTCTCTGGGCATCTGACTTGGTTCAGTCCA
CAGTAGGTCTGGCTGAGCCGAGGCCCCTGCGTGCTTTCTCGTCCTTCCGCTGTCTGGGAC
CAGAGATGCCAGGTAACACTGCCGCATCCGTGCCGGGGCAGTGCCCAGTGGCAGCCTGCA
CCGCGCCAGGCACAGTAGAGGCCTGAGCTGCTTTTCCATCAGGGACACCCCGAGGCAGTC
TGGTGGGAGGGTCGGCACCTATCCCCTGGTGGCGTCTAGCAAGAGGAAAAGTCTGGAGGC
TTGGATCAGCCTTTGTCAGCCTTGATCCAGCAGTGCCCCTGGCTTGGCCCTCTCACACAG
ACTCCCTCTGGGAGCAGCTGACTAGCCAGCATCATCCATGAGAGGACATGGCTGTGCAGG
AGAGGGGCCTGTTCCCCTGTGTGTAAAGCTGCCAGGGTTACAGAGAACTCGCTGCTCCAG
CAGCCAGGCAGGAGTAGGCATTCGCTTGCCATGTGAAGGGAAAGGATGTCAGCTATAGCA
TTAAGATGATGGATCCATCTTCTCCCAGCCCGAATGACTATCAGTGTGATGAAAACGAGC
GCCTGGTAAAAGCTGGAAATCCTCACAGGGCCCGAGCAGCGAAGCCTCCCCCTGCCTGCG
CCTTCCCAGGGACAGTCAGGAGCGCCTCCTGTGCGGCCATGGCTTCCCTTGCACATGAGC
CTGTGGTTAAGACCGGGTCTGTGGCGCAGAGACGTCTTCCCCGTGTCACTTCAGTGTTGA
GAATCGGTCTGCTGATTGTCTTTTCTGAAGACTGAAACTCTCCATCTCCCACCTCCAGGG
AGCTGGTTTTTTGGCCTTGGTTCTTCATGGCGACATCATGTCCCGTGATGCGCCTTCCAT
TGCTCACAAGGGAGATGCAGGTTGAATCCCTGATTCCATGTAAGGCTCACGATGGCATTT
TTCTCATCTCTCTGTATCTTCCCGGGGGAGAGGACTTGCTCAGGGAGAGGGGATGTTTGG
AAACATGTCACTGGTTGCTCCACTGCTCTCGCACACCTCCAGGCTCGTAGCGGCAGCCCC
GTTCTCTGTCACTCTGTCCCACAGCCTCGTCACTGGTGTGTCCTTTCAGTTGAATGGCCT
GTTTAACTGGATCACACCATTGAATCACATGTGTGCAAAGAAAAGCCATGGAGTAAGAGA
CGCTTGAAACACGTGGAGGAGGAAAACAGGTGGCTTTTTCTTCTTTCTTGACATTGAGTT
CTACCAGATGCATTTAGGGGAAATACGGCACTTTGTCTTAAGAAAAAAGAAGGAATGAAA
CCTACAGCAAACCTTTCCTGACTGTCAGCTCTCCTAATCCCACAGCAGCCTTTAAGTCAT
GTGAGGTGAGTTAGGTCTTGGAAGCACTACAGCAACCTGTGCCCCTTATTCTGTAACAGG
ATACCCGGCTCCAGAGCTATGCCTCTGGGCAGCAGAACTTAACTGCGGTTTCTTTTAATA
ATCGTTAAGCCATATCACCTAAGGTTTTCGGCTTGTTTGAGATGTGAATTTGTTTTATAG
ATTATAAATATACATATACAGTGTATGTATAAAGCAGAATGCCTGTCCCTCCTGATTATT
TTTTGTACCATATTGTAAATTATATTATTTATTCTTTACCAATTTTGGGAATAAAAGGTG
TTTGGTTATTTAATATAATAAACAAAAGCTGTTAAACTTCTTATGTTTAAATTTCCAGTT
CAACTTGTAAATCTGTTTTTATTATTGTGCATAAATACATACTAATAC

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-1035, gnl|bosTau2|chr25 (3356811-3355764)
               

               
               1-1035, gnl|Hg17|chr16 (1665819-1666809)
               


               
               1092-1908, gnl|bosTau2|chr25 (3355744-3354968)
               

               
               1092-1908, gnl|Mm7|chr17 (23145103-23144384)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1035, gnl|bosTau2|chr25 (3356811-3355764)
               

               
               1-1035, gnl|Hg17|chr16 (1665819-1666809)
               


               
               1092-1908, gnl|bosTau2|chr25 (3355744-3354968)
               

               
               1092-1908, gnl|Mm7|chr17 (23145103-23144384)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               cte (0.87822)
               

               
               sto (0.359648)
               

               
               gul (0.355177)
               

               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               sto (0.359648)
               

               
               gul (0.355177)
               

               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	1-1035, gnl\|bosTau2\|chr25 (3356811-3355764)
	1-1035, gnl\|Hg17\|chr16 (1665819-1666809)

	1092-1908, gnl\|bosTau2\|chr25 (3355744-3354968)
	1092-1908, gnl\|Mm7\|chr17 (23145103-23144384)

	cte (0.87822)
	sto (0.359648)
	gul (0.355177)
	med (0.232504)
	tes (0.207814)
	aor (0.195274)
	nlu (0.191681)
	cmu (0.186393)
	cut (0.169924)
	ski (0.146735)
	liv (0.146284)
	eru (0.120048)
	pgl (0.118483)
	eje (0.0988338)