Non-Coding RNA Search

Ss1.1-Pig3-SRG8024I05.3

Sequence:


               
               GGCTTTAGTGGATGCCACATCTTACTCAAAAGCTAGAGTGACAGCTGCTTTAACTTTAGA
CAGACTGGACAGACTGTAGGATGCAAACAAATAAACCTCCAGATTGTCTTGCTCGGCCTC
TGACTGCTTCATCTGAGGAGCTGGAATCCAATGGGATATGTCAGGGGCATATTAGGACAG
AGTCAGGTTTCCCAGAAGCTGTGCCCAATACACTGAGAAACAGGCATGTGTGGACACAAC
CTTGGTAGGCCACATCCCGTTCTTAGCTCTTCCTCACTACATGGTGTGGTCGTTTGTGCT
TGGGCTTCTGAGGGAGGTTGCTAAGGGAAGGACAGGTGCCCACAATGGCTGGAACTCCGT
TTCATTTAGCGGCATGGGCGAAATTTTCCCAGAGGCCAACCTTGTGCTTCCATTCAAGGA
CCAGGTCTACACAGGCAATAGGAAGCGAGTCCAAAAACAATTAACTGTATAGTTCAATCT
AAACGTGTAATTTCATTTGTCCAGATGTAAAGATAATTGAAGCCAAGGTGAGTTTTGACC
TTGAATTGTTTGCTGAACAACGACCAGTCTGGGGATAGCCCCCTAAAGAACTATAAAAAA
CCCCCCTAACCTTTCTAAAATTAAAAACAATTTAAATTTCAATGGTCACTGTAAGTGACC
ATTACGTTGTCAGGGGAAAAATACGCTGGATGTTATTTGCCAGATGTGGATTTTAGTACC
GAGAAACCTGTGACCGACGCTCGAGGCTTTCAATAAATGGCCTGGGAAGAAAGTGAGTTT
CCTCTCTGTGTGAGAGGTCAGAGGGACAAGGTAAATAGGACTGTGGCTCATACCTTGAAC
TCCACTATAGGACAAGAGAAATGAGGGTGGGAAGTCTCATTATTTATGTACAGGAAAATG
CTGCTGTTCAGCCTGAAAATCTCACCTCACGTACTGTACTCTTAAGTGAAGTCTCACTTG
CTAATCGGCCACCCTGAGGGTTCACACCCCATTTCTTGGCATCTTGGCAGAACTGTCATA
GCTTAAAGTGTAATGAGGTCTTGGATTACTAGGGCCACCTTGTCTTATGAAATCCTCTGC
GAAACACTGAGCAGAACACATCATCATAAACACCTCTGAAAGGAACAGATGGTTTTGGAC
AGTATATATGTTTGGATAGTTATATATATATAGTTTATTAAATGTATTAATGAACATTTA
TTAAATGACATAATAAATGACATTTATTAATTAAAGGTTGTATAGGCTGTCAAGGATAAG
CTAGCTTGAGATGTAGACGTATCTTTTGTAACCAGTCCGTGTTAAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTTAGTGGATGCCACATCTTACTCAAAAGCTAGAGTGACAGCTGCTTTAACTTTAGA
CAGACTGGACAGACTGTAGGATGCAAACAAATAAACCTCCAGATTGTCTTGCTCGGCCTC
TGACTGCTTCATCTGAGGAGCTGGAATCCAATGGGATATGTCAGGGGCATATTAGGACAG
AGTCAGGTTTCCCAGAAGCTGTGCCCAATACACTGAGAAACAGGCATGTGTGGACACAAC
CTTGGTAGGCCACATCCCGTTCTTAGCTCTTCCTCACTACATGGTGTGGTCGTTTGTGCT
TGGGCTTCTGAGGGAGGTTGCTAAGGGAAGGACAGGTGCCCACAATGGCTGGAACTCCGT
TTCATTTAGCGGCATGGGCGAAATTTTCCCAGAGGCCAACCTTGTGCTTCCATTCAAGGA
CCAGGTCTACACAGGCAATAGGAAGCGAGTCCAAAAACAATTAACTGTATAGTTCAATCT
AAACGTGTAATTTCATTTGTCCAGATGTAAAGATAATTGAAGCCAAGGTGAGTTTTGACC
TTGAATTGTTTGCTGAACAACGACCAGTCTGGGGATAGCCCCCTAAAGAACTATAAAAAA
CCCCCCTAACCTTTCTAAAATTAAAAACAATTTAAATTTCAATGGTCACTGTAAGTGACC
ATTACGTTGTCAGGGGAAAAATACGCTGGATGTTATTTGCCAGATGTGGATTTTAGTACC
GAGAAACCTGTGACCGACGCTCGAGGCTTTCAATAAATGGCCTGGGAAGAAAGTGAGTTT
CCTCTCTGTGTGAGAGGTCAGAGGGACAAGGTAAATAGGACTGTGGCTCATACCTTGAAC
TCCACTATAGGACAAGAGAAATGAGGGTGGGAAGTCTCATTATTTATGTACAGGAAAATG
CTGCTGTTCAGCCTGAAAATCTCACCTCACGTACTGTACTCTTAAGTGAAGTCTCACTTG
CTAATCGGCCACCCTGAGGGTTCACACCCCATTTCTTGGCATCTTGGCAGAACTGTCATA
GCTTAAAGTGTAATGAGGTCTTGGATTACTAGGGCCACCTTGTCTTATGAAATCCTCTGC
GAAACACTGAGCAGAACACATCATCATAAACACCTCTGAAAGGAACAGATGGTTTTGGAC
AGTATATATGTTTGGATAGTTATATATATATAGTTTATTAAATGTATTAATGAACATTTA
TTAAATGACATAATAAATGACATTTATTAATTAAAGGTTGTATAGGCTGTCAAGGATAAG
CTAGCTTGAGATGTAGACGTATCTTTTGTAACCAGTCCGTGTTAAGGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               83-200, + strand, RNAz p=0.938498
               

               
               571-755, - strand, RNAz p=0.999945

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-200, + strand, RNAz p=0.938498
               

               
               571-755, - strand, RNAz p=0.999945

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1176, gnl|bosTau2|chr20 (26759114-26760291)
               

               
               4-1176, gnl|Hg17|chr5 (32813570-32814790)
               

               
               4-1176, gnl|Mm7|chr15 (11914993-11913755)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1176, gnl|bosTau2|chr20 (26759114-26760291)
               

               
               4-1176, gnl|Hg17|chr5 (32813570-32814790)
               

               
               4-1176, gnl|Mm7|chr15 (11914993-11913755)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	83-200, + strand, RNAz p=0.938498
	571-755, - strand, RNAz p=0.999945

	4-1176, gnl\|bosTau2\|chr20 (26759114-26760291)
	4-1176, gnl\|Hg17\|chr5 (32813570-32814790)
	4-1176, gnl\|Mm7\|chr15 (11914993-11913755)