Ss1.1-Pig3-SRG8024I14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCAATCAGGACGCCTCCCTCATCTGCGTCTCCAGTGACCACGGCACCGTGCACGTCTT TGCCGCTGAGGACCCGAAAAGGAATAAGCAGTCCAGTTTGGCATCGGCCAGTTTCCTTCC AAAGTACTTCAGTTCCAAGTGGAGCTTCTCCAAGTTTCAGGTGCCCTCGGGCTCCCCGTG CATCTGTGCCTTTGGGACAGAGCCCAACGCTGTCATTGCCATCTGCGCAGACGGCAGCTA CTACAAGTTCCTGTTCAACCCCAAGGGCGAGTGCGTCCGCGACGTGTACGCGCAGTTCCT GGAGATGACCGACGACCGGCTGTGACCCGCCCCAGGCGCACCGGCAGCACCGCGGCCTCC GACGCCAGGCGTGAAGGGGAGACTCCCCGGGCACGTGGGCGCCCGCCGCTGGCTCTACCG TTCAGGCGGCCACCGCGACGCTCACCTCAGTGGCTCCACCGCGTCCTCTGCCTGCACCTG GGGCTCCGGACAAACTTAGGGGCGCCTTGAAATGTCCGTCATTTTTCCCGAGTCTGTAAC GGGAGGGGAACGTGCCTGTGAACCGGACTCGTGTGAACTGGACGTAAGTGGGTGATCACA CCGGCAGCCTTAGCGGAGGAGGAAAAGCCCCTCTCCCGTCTGAGCGGAGGCGGCGGCACA GGCCGGCAGCCCTCGGGAGCCCGCGGTCTCACCTCGAGCCCGCCAGGCGGCCCTGCCGTC TGCGGCAGCTGTTGGGGCGGCCCTGCCTTCTGCGTAGCGCCGTGGCCTCCTGGTGACGCG TTTCCCTCCGACGCGGACTTTAGAAATGAGTCATGGGAGAACGCGTCCCTTAACGCGGAG GCTACGAAGGGTGACCGCTGCCGCAGCGAAGCCAGGCAGGGCCTCGTCCGGGGACCTTGG TGGCCACTGGCCGCCCCTCGGCGCTCGCTGGCCTTCGGGGAGCTGTGCGCTAGCACCTGG GAGCTGAGCTGGGTCGTGGGCTCTGTCCTGTTAGTCCTGCTACAGTATACGTTTCATTTT CTCAGACTCCCTTTCCACCTAATTTTGTTTTGATTTCAGGCTGCAAACATTCAGGACCTA CAGGTTCCCCGTTTTGTCAGTTCTTTTATTGTCCTGTAATCAGCTAATCCTGTCTGTGGG TTTCAGTGTAAAGTATGCATGTTACTTTTATGTGTATTTAATCATGAAATTTAATTTTGC ACACTTATTTGTAATGTTTCTTTTAAATAAAAGTGACTAATTTTGTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCAATCAGGACGCCTCCCTCATCTGCGTCTCCAGTGACCACGGCACCGTGCACGTCTT TGCCGCTGAGGACCCGAAAAGGAATAAGCAGTCCAGTTTGGCATCGGCCAGTTTCCTTCC AAAGTACTTCAGTTCCAAGTGGAGCTTCTCCAAGTTTCAGGTGCCCTCGGGCTCCCCGTG CATCTGTGCCTTTGGGACAGAGCCCAACGCTGTCATTGCCATCTGCGCAGACGGCAGCTA CTACAAGTTCCTGTTCAACCCCAAGGGCGAGTGCGTCCGCGACGTGTACGCGCAGTTCCT GGAGATGACCGACGACCGGCTGTGACCCGCCCCAGGCGCACCGGCAGCACCGCGGCCTCC GACGCCAGGCGTGAAGGGGAGACTCCCCGGGCACGTGGGCGCCCGCCGCTGGCTCTACCG TTCAGGCGGCCACCGCGACGCTCACCTCAGTGGCTCCACCGCGTCCTCTGCCTGCACCTG GGGCTCCGGACAAACTTAGGGGCGCCTTGAAATGTCCGTCATTTTTCCCGAGTCTGTAAC GGGAGGGGAACGTGCCTGTGAACCGGACTCGTGTGAACTGGACGTAAGTGGGTGATCACA CCGGCAGCCTTAGCGGAGGAGGAAAAGCCCCTCTCCCGTCTGAGCGGAGGCGGCGGCACA GGCCGGCAGCCCTCGGGAGCCCGCGGTCTCACCTCGAGCCCGCCAGGCGGCCCTGCCGTC TGCGGCAGCTGTTGGGGCGGCCCTGCCTTCTGCGTAGCGCCGTGGCCTCCTGGTGACGCG TTTCCCTCCGACGCGGACTTTAGAAATGAGTCATGGGAGAACGCGTCCCTTAACGCGGAG GCTACGAAGGGTGACCGCTGCCGCAGCGAAGCCAGGCAGGGCCTCGTCCGGGGACCTTGG TGGCCACTGGCCGCCCCTCGGCGCTCGCTGGCCTTCGGGGAGCTGTGCGCTAGCACCTGG GAGCTGAGCTGGGTCGTGGGCTCTGTCCTGTTAGTCCTGCTACAGTATACGTTTCATTTT CTCAGACTCCCTTTCCACCTAATTTTGTTTTGATTTCAGGCTGCAAACATTCAGGACCTA CAGGTTCCCCGTTTTGTCAGTTCTTTTATTGTCCTGTAATCAGCTAATCCTGTCTGTGGG TTTCAGTGTAAAGTATGCATGTTACTTTTATGTGTATTTAATCATGAAATTTAATTTTGC ACACTTATTTGTAATGTTTCTTTTAAATAAAAGTGACTAATTTTGTTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 94-218, gnl|bosTau2|chr19 (44228000-44228124) | |
| 94-218, gnl|canFam2|chrUn (11881642-11881521) | |
| 94-218, gnl|danRer3|chrNA (144971959-144972080) | |
| 94-218, gnl|dasNov1|scaffold_19875 (4871-4994) | |
| 94-218, gnl|echTel1|scaffold_241595 (5283-5392) | |
| 94-218, gnl|galGal2|chr18 (3240396-3240516) | |
| 94-218, gnl|Hg17|chr17 (78167813-78167689) | |
| 94-218, gnl|hg17|chr18 (32108334-32108456) | |
| 94-218, gnl|Mm7|chr11 (121437962-121437838) | |
| 94-218, gnl|mm7|chr16 (10869684-10869561) | |
| 94-218, gnl|monDom2|scaffold_15 (28396130-28395987) | |
| 94-218, gnl|oryCun1|scaffold_215164 (54061-54184) | |
| 94-218, gnl|panTro1|chr17 (28082417-28082531) | |
| 94-218, gnl|rheMac2|chr18 (29196501-29196623) | |
| 94-218, gnl|rn3|chr10 (110574545-110574423) | |
| 94-218, gnl|tetNig1|chrUn_random (36301360-36301241) | |
| 94-218, gnl|xenTro1|scaffold_1433 (51817-51698) | |
| 958-1248, gnl|bosTau2|chr19 (44229447-44229743) | |
| 958-1248, gnl|canFam2|chrUn (11879892-11880193) | |
| 958-1248, gnl|dasNov1|scaffold_19875 (6762-6496) | |
| 958-1248, gnl|echTel1|scaffold_241595 (6837-6539) | |
| 958-1248, gnl|galGal2|chr18 (3242382-3242077) | |
| 958-1248, gnl|hg17|chr17 (27461323-27461644) | |
| 958-1248, gnl|Hg17|chr17 (78166050-78165743) | |
| 958-1248, gnl|Mm7|chr11 (121436581-121436284) | |
| 958-1248, gnl|mm7|chr16 (10868343-10868643) | |
| 958-1248, gnl|monDom2|scaffold_88 (770942-771240) | |
| 958-1248, gnl|oryCun1|scaffold_215164 (55436-55153) | |
| 958-1248, gnl|panTro1|chr19_random (14889803-14889482) | |
| 958-1248, gnl|rheMac2|chr16 (78092575-78092891) | |
| 958-1248, gnl|rn3|chr10 (110572822-110573151) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 94-218, gnl|bosTau2|chr19 (44228000-44228124) | |
| 94-218, gnl|canFam2|chrUn (11881642-11881521) | |
| 94-218, gnl|danRer3|chrNA (144971959-144972080) | |
| 94-218, gnl|dasNov1|scaffold_19875 (4871-4994) | |
| 94-218, gnl|echTel1|scaffold_241595 (5283-5392) | |
| 94-218, gnl|galGal2|chr18 (3240396-3240516) | |
| 94-218, gnl|Hg17|chr17 (78167813-78167689) | |
| 94-218, gnl|hg17|chr18 (32108334-32108456) | |
| 94-218, gnl|Mm7|chr11 (121437962-121437838) | |
| 94-218, gnl|mm7|chr16 (10869684-10869561) | |
| 94-218, gnl|monDom2|scaffold_15 (28396130-28395987) | |
| 94-218, gnl|oryCun1|scaffold_215164 (54061-54184) | |
| 94-218, gnl|panTro1|chr17 (28082417-28082531) | |
| 94-218, gnl|rheMac2|chr18 (29196501-29196623) | |
| 94-218, gnl|rn3|chr10 (110574545-110574423) | |
| 94-218, gnl|tetNig1|chrUn_random (36301360-36301241) | |
| 94-218, gnl|xenTro1|scaffold_1433 (51817-51698) | |
| 958-1248, gnl|bosTau2|chr19 (44229447-44229743) | |
| 958-1248, gnl|canFam2|chrUn (11879892-11880193) | |
| 958-1248, gnl|dasNov1|scaffold_19875 (6762-6496) | |
| 958-1248, gnl|echTel1|scaffold_241595 (6837-6539) | |
| 958-1248, gnl|galGal2|chr18 (3242382-3242077) | |
| 958-1248, gnl|hg17|chr17 (27461323-27461644) | |
| 958-1248, gnl|Hg17|chr17 (78166050-78165743) | |
| 958-1248, gnl|Mm7|chr11 (121436581-121436284) | |
| 958-1248, gnl|mm7|chr16 (10868343-10868643) | |
| 958-1248, gnl|monDom2|scaffold_88 (770942-771240) | |
| 958-1248, gnl|oryCun1|scaffold_215164 (55436-55153) | |
| 958-1248, gnl|panTro1|chr19_random (14889803-14889482) | |
| 958-1248, gnl|rheMac2|chr16 (78092575-78092891) | |
| 958-1248, gnl|rn3|chr10 (110572822-110573151) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| fce (0.543183) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| eje (0.0988338) |