Non-Coding RNA Search

Ss1.1-Pig3-SRG8024I19.3

Sequence:


               
               GTGCTCGGTCCGCACACCTGAGAGCTCTCACGAGGGGCTGGTGACAGATCCCCACAGCCC
TGCCCGCTTCCGCGTGCTGGGCACTCTCTCCAACGGGCGTGACTTCCTGCGGCACTTCGG
CTGCCCCGTCGGCTCCCCCATGAACTCAGGGCAGCTGTGTGAGGTGTGGTAGACCCAGGT
CAGGGGAGAAATGGCTGGCTGTTGCCAGGGCCTGGGGCAGCTCGCCCAGCCTTCTGTCTT
CTGCTCTGGGTTTGGAGAAGGCAAATGCCAGCTGTGCTGGGCCCAGCCCTTCTACACCAC
AGATGACATCAGTCCTAATCCCTCCTCGACCACCACATTGTGCCTCTGCTTTGGGGGTGT
CCCTGCCTCCAGCAGAGCCCCCACCATTCACTGTGACATTCTTCTGTGTCACCCTGCCTG
GAGGAGGCCTGGGCGGGGGAGGGGAGATACCAGCTCCCACAGGAAGGAGTCCGCCTCTTC
TGGTCCCAAGCTCACCCCCTTCTTCACTGTCTACATCAGTGCTGACTCTAAGAGTTCCAA
CAGCAATGTTATCCTGGTGTGCCTCCCACACTTCTCCCAGAGGCTCCTTCAGGAGCTCGT
TTCAACCACACCCTCGGGGGCAGCCCCCACACCCTGTTCCTCCTGCTGCTGCTCCTACCA
CTGCTTCCAGCCCTCCCTGACAGACCAGCTGTGCTCAGCTCTTAGTGGAAGCCCAAGGAC
CTTTACAAACCTTCCTACCCTCTCCTGGGTTCCCTGGGCTCAGACAGGAAGTGTGTATGC
ATTTGGAGGGCTAGTTCCTATGTCTCGGGGTATAAGTCTTAGAGGGTGATGATTATCCCT
GGACCAAGCAGGAGAGCAGGGAGAGGGGAAGGACAGAGTTTATTTTTACAGGGAAAAGGG
TGGGGAGGGCGTGGTCTTGGCCCTGTAGGACCCTGTGCCAATAAATAGACACACATCAGT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCTCGGTCCGCACACCTGAGAGCTCTCACGAGGGGCTGGTGACAGATCCCCACAGCCC
TGCCCGCTTCCGCGTGCTGGGCACTCTCTCCAACGGGCGTGACTTCCTGCGGCACTTCGG
CTGCCCCGTCGGCTCCCCCATGAACTCAGGGCAGCTGTGTGAGGTGTGGTAGACCCAGGT
CAGGGGAGAAATGGCTGGCTGTTGCCAGGGCCTGGGGCAGCTCGCCCAGCCTTCTGTCTT
CTGCTCTGGGTTTGGAGAAGGCAAATGCCAGCTGTGCTGGGCCCAGCCCTTCTACACCAC
AGATGACATCAGTCCTAATCCCTCCTCGACCACCACATTGTGCCTCTGCTTTGGGGGTGT
CCCTGCCTCCAGCAGAGCCCCCACCATTCACTGTGACATTCTTCTGTGTCACCCTGCCTG
GAGGAGGCCTGGGCGGGGGAGGGGAGATACCAGCTCCCACAGGAAGGAGTCCGCCTCTTC
TGGTCCCAAGCTCACCCCCTTCTTCACTGTCTACATCAGTGCTGACTCTAAGAGTTCCAA
CAGCAATGTTATCCTGGTGTGCCTCCCACACTTCTCCCAGAGGCTCCTTCAGGAGCTCGT
TTCAACCACACCCTCGGGGGCAGCCCCCACACCCTGTTCCTCCTGCTGCTGCTCCTACCA
CTGCTTCCAGCCCTCCCTGACAGACCAGCTGTGCTCAGCTCTTAGTGGAAGCCCAAGGAC
CTTTACAAACCTTCCTACCCTCTCCTGGGTTCCCTGGGCTCAGACAGGAAGTGTGTATGC
ATTTGGAGGGCTAGTTCCTATGTCTCGGGGTATAAGTCTTAGAGGGTGATGATTATCCCT
GGACCAAGCAGGAGAGCAGGGAGAGGGGAAGGACAGAGTTTATTTTTACAGGGAAAAGGG
TGGGGAGGGCGTGGTCTTGGCCCTGTAGGACCCTGTGCCAATAAATAGACACACATCAGT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-507, + strand, RNAz p=0.99857

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-507, + strand, RNAz p=0.99857

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               76-199, + strand, RNAmicro p=0.997851
               

               
               365-444, + strand, RNAmicro p=0.996126

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               76-199, + strand, RNAmicro p=0.997851
               

               
               365-444, + strand, RNAmicro p=0.996126

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               320-193, AV708732 ADC Homo sapiens cDNA clone ADCAXE12 5', mRNA sequence 
(dbj|AV708732.1|), blast E-value=7e-37, identity=92.98% 
               

               
               80-371, 454333 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI540876.1|), 
blast E-value=5.04467e-44, identity=84.23% 
               

               
               80-438, UI-E-EJ0-aho-n-24-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM713622.1|), blast E-value=4e-35, identity=91.6% 
               

               
               80-492, NISC_kk04h10.y2 NCI_CGAP_Brn72 Macaca mulatta cDNA clone 
(gb|BQ807502.1|), blast E-value=1e-35, identity=86.78% 
               

               
               140-439, 1182700 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN282602.1|), 
blast E-value=4e-38, identity=83.33% 
               

               
               80-439, 001016BEMN047355HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY188667.1|), 
blast E-value=0, identity=85.25%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               320-193, AV708732 ADC Homo sapiens cDNA clone ADCAXE12 5', mRNA sequence 
(dbj|AV708732.1|), blast E-value=7e-37, identity=92.98% 
               

               
               80-371, 454333 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI540876.1|), 
blast E-value=5.04467e-44, identity=84.23% 
               

               
               80-438, UI-E-EJ0-aho-n-24-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM713622.1|), blast E-value=4e-35, identity=91.6% 
               

               
               80-492, NISC_kk04h10.y2 NCI_CGAP_Brn72 Macaca mulatta cDNA clone 
(gb|BQ807502.1|), blast E-value=1e-35, identity=86.78% 
               

               
               140-439, 1182700 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN282602.1|), 
blast E-value=4e-38, identity=83.33% 
               

               
               80-439, 001016BEMN047355HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY188667.1|), 
blast E-value=0, identity=85.25%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF428264, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF428264, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-962, gnl|bosTau2|chr1 (52298445-52297467)
               

               
               1-962, gnl|Hg17|chr3 (185492557-185493521)
               

               
               1-962, gnl|Mm7|chr16 (20195086-20195941)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-962, gnl|bosTau2|chr1 (52298445-52297467)
               

               
               1-962, gnl|Hg17|chr3 (185492557-185493521)
               

               
               1-962, gnl|Mm7|chr16 (20195086-20195941)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.285673)
               

               
               fhi (0.169578)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               fhi (0.169578)

	76-199, + strand, RNAmicro p=0.997851
	365-444, + strand, RNAmicro p=0.996126

	320-193, AV708732 ADC Homo sapiens cDNA clone ADCAXE12 5', mRNA sequence (dbj\|AV708732.1\|), blast E-value=7e-37, identity=92.98%
	80-371, 454333 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb\|BI540876.1\|), blast E-value=5.04467e-44, identity=84.23%
	80-438, UI-E-EJ0-aho-n-24-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone (gb\|BM713622.1\|), blast E-value=4e-35, identity=91.6%
	80-492, NISC_kk04h10.y2 NCI_CGAP_Brn72 Macaca mulatta cDNA clone (gb\|BQ807502.1\|), blast E-value=1e-35, identity=86.78%
	140-439, 1182700 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN282602.1\|), blast E-value=4e-38, identity=83.33%
	80-439, 001016BEMN047355HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY188667.1\|), blast E-value=0, identity=85.25%

	1-962, gnl\|bosTau2\|chr1 (52298445-52297467)
	1-962, gnl\|Hg17\|chr3 (185492557-185493521)
	1-962, gnl\|Mm7\|chr16 (20195086-20195941)