Non-Coding RNA Search

Ss1.1-Pig3-SRG8024K05.3

Sequence:


               
               GCTAGCGCGAGGCTGTGGAGCGCTGAGCCGCGCGTCGTGCCCTGCGCTGCCCAGACTAGC
GAACAATACAGTCAAGATGGCTAAAGGTGATCCCAAGAAACCAAAGGGCAAGATGTCTGC
TTATGCCTTCTTTGTGCAGACATGCAGGGAGGAACACAAGAAGAAAAACCCCGAGGTCCC
TGTCAATTTTGCCGAATTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACCATGTCTGGGAA
GGAGAAGTCTAAATTTGATGAAATGGCCAAGGCAGATAAGGTGCGCTATGATCGGGAAAT
GAAGGATTACGGGCCAGCTAAGGGAGGCAAGAAGAAGAAGGACCCTAATGCCCCCAAGAG
GCCACCGTCTGGATTTTTCCTCTTCTGCTCAGAATTCCGCCCCAAGATCAAGTCTACCAA
CCCTGGCATCTCCATCGGAGACGTGGCCAAGAAGCTGGGTGAGATGTGGAATAACTTAAG
TGACAGCGAGAAGCAGCCGTACATCAATAAGGCGGCGAAGCTGAAGGAGAAGTATGAGAA
GGATGTCGCGGACTATAAGTCCAAGGGGAAGTTCGACGGCGCCAAGGGGCCTGCCAAAGT
CGCCCGGAAAAAGGTCGAAGAGGACGACGAGGATGAGGACGACGACGACGACGACGAGGA
GGAGGAGGAGGAGGAGGATGAATAAAGAAACTGTTGCTCTGTCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAGCGCGAGGCTGTGGAGCGCTGAGCCGCGCGTCGTGCCCTGCGCTGCCCAGACTAGC
GAACAATACAGTCAAGATGGCTAAAGGTGATCCCAAGAAACCAAAGGGCAAGATGTCTGC
TTATGCCTTCTTTGTGCAGACATGCAGGGAGGAACACAAGAAGAAAAACCCCGAGGTCCC
TGTCAATTTTGCCGAATTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACCATGTCTGGGAA
GGAGAAGTCTAAATTTGATGAAATGGCCAAGGCAGATAAGGTGCGCTATGATCGGGAAAT
GAAGGATTACGGGCCAGCTAAGGGAGGCAAGAAGAAGAAGGACCCTAATGCCCCCAAGAG
GCCACCGTCTGGATTTTTCCTCTTCTGCTCAGAATTCCGCCCCAAGATCAAGTCTACCAA
CCCTGGCATCTCCATCGGAGACGTGGCCAAGAAGCTGGGTGAGATGTGGAATAACTTAAG
TGACAGCGAGAAGCAGCCGTACATCAATAAGGCGGCGAAGCTGAAGGAGAAGTATGAGAA
GGATGTCGCGGACTATAAGTCCAAGGGGAAGTTCGACGGCGCCAAGGGGCCTGCCAAAGT
CGCCCGGAAAAAGGTCGAAGAGGACGACGAGGATGAGGACGACGACGACGACGACGAGGA
GGAGGAGGAGGAGGAGGATGAATAAAGAAACTGTTGCTCTGTCAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47124341|gb|AAH70482.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47124341|gb|AAH70482.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-154, - strand, RNAz p=0.909536
               

               
               304-530, + strand, RNAz p=0.970177

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-154, - strand, RNAz p=0.909536
               

               
               304-530, + strand, RNAz p=0.970177

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-703, gnl|bosTau2|chr24 (17814133-17813443)
               

               
               1-703, gnl|Hg17|chr1 (161057585-161058282)
               

               
               1-703, gnl|Mm7|chr1 (4876319-4875631)
               


               
               52-651, gnl|bosTau2|chr22 (28774577-28774011)
               

               
               52-651, gnl|Hg17|chr1 (161057637-161058246)
               

               
               52-651, gnl|Mm7|chr1 (4876268-4875657)
               


               
               225-512, gnl|bosTau2|chr19 (6151962-6152252)
               

               
               225-512, gnl|Hg17|chr15 (69244662-69244369)
               

               
               225-512, gnl|Mm7|chr12 (49422500-49422797)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-703, gnl|bosTau2|chr24 (17814133-17813443)
               

               
               1-703, gnl|Hg17|chr1 (161057585-161058282)
               

               
               1-703, gnl|Mm7|chr1 (4876319-4875631)
               


               
               52-651, gnl|bosTau2|chr22 (28774577-28774011)
               

               
               52-651, gnl|Hg17|chr1 (161057637-161058246)
               

               
               52-651, gnl|Mm7|chr1 (4876268-4875657)
               


               
               225-512, gnl|bosTau2|chr19 (6151962-6152252)
               

               
               225-512, gnl|Hg17|chr15 (69244662-69244369)
               

               
               225-512, gnl|Mm7|chr12 (49422500-49422797)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               elu (1.15607)
               

               
               tes (1.03907)
               

               
               nbm (0.297974)
               

               
               hea (0.204499)
               

               
               cje (0.165235)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (1.15607)
               

               
               tes (1.03907)
               

               
               nbm (0.297974)
               

               
               hea (0.204499)
               

               
               cje (0.165235)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	40-154, - strand, RNAz p=0.909536
	304-530, + strand, RNAz p=0.970177

	1-703, gnl\|bosTau2\|chr24 (17814133-17813443)
	1-703, gnl\|Hg17\|chr1 (161057585-161058282)
	1-703, gnl\|Mm7\|chr1 (4876319-4875631)

	52-651, gnl\|bosTau2\|chr22 (28774577-28774011)
	52-651, gnl\|Hg17\|chr1 (161057637-161058246)
	52-651, gnl\|Mm7\|chr1 (4876268-4875657)

	225-512, gnl\|bosTau2\|chr19 (6151962-6152252)
	225-512, gnl\|Hg17\|chr15 (69244662-69244369)
	225-512, gnl\|Mm7\|chr12 (49422500-49422797)

	elu (1.15607)
	tes (1.03907)
	nbm (0.297974)
	hea (0.204499)
	cje (0.165235)
	bla (0.124347)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)