Non-Coding RNA Search

Ss1.1-Pig3-SRG8024K07.3

Sequence:


               
               CCTCTCAGGAGGAAGGGGAGACCACGCCAAGCTCTCCCACCGAGGACAACTCCACCACCG
ACAACATTGCCTTCATGATCACCAAAACCGCGGTCCAGGTCCTCTCCACCGGGGAGGTCC
TCGATATAGTGAGCAAACAGGGGGAAGAGGTGCAGACGGTCAATATTGACGCCAAAAAAG
AGGCGGCTTTCCGGCCAGCAGGCGCTGAAAATGAAGAGCCGGTCGTGTGCCTGGACAAGA
AACCCGTGATCATCATTTTTGACGAGCCCATGGACATCCGGTCGGCGTATAAGAGACTGT
CAACCATATTTGAGGAATGCGACGAGGAACTGGAGAGGATGATGATGGAGGAAAAGATAG
AGGAAGAGGAGGAGGAGGAGAGCGGAGACCCTGTGGTCCAGAGCAACACTGTCCCCAAGC
TTCCGAAGGAGGTGGCCTGGGGTGGCCCCGGAGCCGGGCAGCAGGCTGAGAGCACATTCC
AGCCACCCTCCCATTCAGGGGAGGCCAGAGCATCAGGGGGCCGGGAAGTGAATCAAACTG
AGCAGGGCAACGCCAGCCAAGCCCATTCTCCAAGTTCAGAGAGCCAGGCTGATGGGACCG
ATGACCAGTTTGAAAGCCCCAAGAAGAAGTTCAAATTCAAATTCCCAAAGAAGCAGCTCG
CCGCCCTCACACAAGCCATTCGCACGGGAACCAAGACGGGAAAGAAGACCCTGCAGGTGG
TGGTTTACGAGGAGGAGGAGGAGGACGGCGCCCTGAAGCAGCACAAAGAAGCCAAGCGTT
TCGAGATCAGTAGGTCTCAGTCTGAAGACACCCCTCAAAACACGCCTCGGAGACCCGACC
GGCCGGGTCTGGAGAGCGGGGCTCTGACTTCCAGAACTGATGAAATCAGAAAAAATACCT
ACAGGACGCTGGACAGCCTGGAGCAGACCATCAAACAGCTGGAAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTCAGGAGGAAGGGGAGACCACGCCAAGCTCTCCCACCGAGGACAACTCCACCACCG
ACAACATTGCCTTCATGATCACCAAAACCGCGGTCCAGGTCCTCTCCACCGGGGAGGTCC
TCGATATAGTGAGCAAACAGGGGGAAGAGGTGCAGACGGTCAATATTGACGCCAAAAAAG
AGGCGGCTTTCCGGCCAGCAGGCGCTGAAAATGAAGAGCCGGTCGTGTGCCTGGACAAGA
AACCCGTGATCATCATTTTTGACGAGCCCATGGACATCCGGTCGGCGTATAAGAGACTGT
CAACCATATTTGAGGAATGCGACGAGGAACTGGAGAGGATGATGATGGAGGAAAAGATAG
AGGAAGAGGAGGAGGAGGAGAGCGGAGACCCTGTGGTCCAGAGCAACACTGTCCCCAAGC
TTCCGAAGGAGGTGGCCTGGGGTGGCCCCGGAGCCGGGCAGCAGGCTGAGAGCACATTCC
AGCCACCCTCCCATTCAGGGGAGGCCAGAGCATCAGGGGGCCGGGAAGTGAATCAAACTG
AGCAGGGCAACGCCAGCCAAGCCCATTCTCCAAGTTCAGAGAGCCAGGCTGATGGGACCG
ATGACCAGTTTGAAAGCCCCAAGAAGAAGTTCAAATTCAAATTCCCAAAGAAGCAGCTCG
CCGCCCTCACACAAGCCATTCGCACGGGAACCAAGACGGGAAAGAAGACCCTGCAGGTGG
TGGTTTACGAGGAGGAGGAGGAGGACGGCGCCCTGAAGCAGCACAAAGAAGCCAAGCGTT
TCGAGATCAGTAGGTCTCAGTCTGAAGACACCCCTCAAAACACGCCTCGGAGACCCGACC
GGCCGGGTCTGGAGAGCGGGGCTCTGACTTCCAGAACTGATGAAATCAGAAAAAATACCT
ACAGGACGCTGGACAGCCTGGAGCAGACCATCAAACAGCTGGAAAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34531848|dbj|BAC86241.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34531848|dbj|BAC86241.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               328-444, - strand, RNAz p=0.571121

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               328-444, - strand, RNAz p=0.571121

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-948, gnl|bosTau2|chr13 (11814236-11813297)
               

               
               9-948, gnl|Hg17|chr10 (24872295-24873240)
               

               
               9-948, gnl|Mm7|chr2 (20871420-20872356)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-948, gnl|bosTau2|chr13 (11814236-11813297)
               

               
               9-948, gnl|Hg17|chr10 (24872295-24873240)
               

               
               9-948, gnl|Mm7|chr2 (20871420-20872356)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.322373)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.322373)

	9-948, gnl\|bosTau2\|chr13 (11814236-11813297)
	9-948, gnl\|Hg17\|chr10 (24872295-24873240)
	9-948, gnl\|Mm7\|chr2 (20871420-20872356)