Non-Coding RNA Search

Ss1.1-Pig3-SRG8024K22.3

Sequence:


               
               GGTCGTAAGAGGAGGAATAACAGTACTGAAGCTGTCCTTACGGGGCCTGTAGTCTTCTAC
AGAGCATGTGGGCTAGTTTCAAACAAGGTTGAATTCTCTTGGAACTTCTTTTACAGGGAG
ATCCCTGTATAATGAGATAAACTTAGGCTTACGGAGAGGCTGTATGTAAAACGTTGGGCG
GTTGGTATAGTGACTGCTGAATAGTTCTGTATTTGGGAGGGATTTATCAATAGCTTTTTA
GTCTCTTGACTGAGTGTTCCTTTTTTTTATCCTCCTAAGATTTTTTATCAGTAAAGCTGT
CATCCATCTCTGATTGTGGATCTACAGTTGGGTGAGTTAAATGTCTACCTGAAGTTTTAT
CACAACTTTATTGCAGCTTCCAGAAGTTTTTGACTGCTATGACCCTAAGCAGTGTAGCAA
AGGCTATTCAGGTCTGGTTTTTTTTAAATCTTATTTTTTAAATATAGCATTTATACCTGG
CCTGCCTTGCCTTGTCTGGCTTATTTGTTGGCTTTCACAACTGGGGGACAAACAAATGCG
TACAGGGGAGTTCCCAATGTGGTTCAGGGGTTAAGAACCTTGGCTTGAGCTCATGCCTCT
CCTGTGGGAGGGTGGGAGAGTAGCTCAGGGTATTTTTTCCAGGCTGTGACTGGTCCAGGA
TGAAACCTTATCTGAGTGGACATCTGTGGATGATAAATGCGGATATGGGACTGAGACCGG
CTCTTAGGAAAATGCTTGAGTAGCATTGATTAATTGGGGCAGTACTAACACACTGGCTTA
TACTTCCTTTTCAGGAGAGAGACACTACACAAAGAGGCAAATGAAGAGACAAGAAGCTCT
TTTAGGTGTAAAAACTGACTTTTTGCACATGTTGGTACATGGTGTATAAATGACCAATAA
AAGACTCCTGGATAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCGTAAGAGGAGGAATAACAGTACTGAAGCTGTCCTTACGGGGCCTGTAGTCTTCTAC
AGAGCATGTGGGCTAGTTTCAAACAAGGTTGAATTCTCTTGGAACTTCTTTTACAGGGAG
ATCCCTGTATAATGAGATAAACTTAGGCTTACGGAGAGGCTGTATGTAAAACGTTGGGCG
GTTGGTATAGTGACTGCTGAATAGTTCTGTATTTGGGAGGGATTTATCAATAGCTTTTTA
GTCTCTTGACTGAGTGTTCCTTTTTTTTATCCTCCTAAGATTTTTTATCAGTAAAGCTGT
CATCCATCTCTGATTGTGGATCTACAGTTGGGTGAGTTAAATGTCTACCTGAAGTTTTAT
CACAACTTTATTGCAGCTTCCAGAAGTTTTTGACTGCTATGACCCTAAGCAGTGTAGCAA
AGGCTATTCAGGTCTGGTTTTTTTTAAATCTTATTTTTTAAATATAGCATTTATACCTGG
CCTGCCTTGCCTTGTCTGGCTTATTTGTTGGCTTTCACAACTGGGGGACAAACAAATGCG
TACAGGGGAGTTCCCAATGTGGTTCAGGGGTTAAGAACCTTGGCTTGAGCTCATGCCTCT
CCTGTGGGAGGGTGGGAGAGTAGCTCAGGGTATTTTTTCCAGGCTGTGACTGGTCCAGGA
TGAAACCTTATCTGAGTGGACATCTGTGGATGATAAATGCGGATATGGGACTGAGACCGG
CTCTTAGGAAAATGCTTGAGTAGCATTGATTAATTGGGGCAGTACTAACACACTGGCTTA
TACTTCCTTTTCAGGAGAGAGACACTACACAAAGAGGCAAATGAAGAGACAAGAAGCTCT
TTTAGGTGTAAAAACTGACTTTTTGCACATGTTGGTACATGGTGTATAAATGACCAATAA
AAGACTCCTGGATAAAAAAAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-368, gnl|bosTau2|chr2 (76777805-76777476)
               

               
               1-368, gnl|Hg17|chr1 (28726976-28726608)
               


               
               621-913, gnl|bosTau2|chr2 (76777133-76776847)
               

               
               621-913, gnl|Hg17|chr1 (28725973-28725669)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-368, gnl|bosTau2|chr2 (76777805-76777476)
               

               
               1-368, gnl|Hg17|chr1 (28726976-28726608)
               


               
               621-913, gnl|bosTau2|chr2 (76777133-76776847)
               

               
               621-913, gnl|Hg17|chr1 (28725973-28725669)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               aor (0.195274)
               

               
               mcp (0.170648)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               mcp (0.170648)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               jej (0.0989218)

	1-368, gnl\|bosTau2\|chr2 (76777805-76777476)
	1-368, gnl\|Hg17\|chr1 (28726976-28726608)

	621-913, gnl\|bosTau2\|chr2 (76777133-76776847)
	621-913, gnl\|Hg17\|chr1 (28725973-28725669)

	aor (0.195274)
	mcp (0.170648)
	spl (0.143184)
	ova (0.129132)
	jej (0.0989218)