Non-Coding RNA Search

Ss1.1-Pig3-SRG8024L09.5

Sequence:


               
               CTGGTAAACTCATCTCACTTAGAGGAAAAACCAAAGCCCCTAAAGTGTTTTACAGATTTT
TTTCCCTTTTTGACCTCCCGTTCCTCTCTACCTCACTCGATCTTCTCCCAGAAGCACAGA
TCTCATTGTTTCTGTGCTCTGAGCTTAGCCTTGTCATTAGTTCTCCCCTTTGTCTAGAAT
GCGGTTGCTCCAAATCCATGTCTTGTCCCTCAGCTGCCTTCAAGTCTGTTCAAACGTCAC
CCCAAGTGATGAGCCATGTGGCCCATACTGGGTAGGGAAAGCAGTGATGACTAGAAGGGG
CATTTCACTGAGGGAAAATGGAGCTGTCAGAAAATGGGAGAGTATCAAGTGCACTTACTT
CTGCAGAACATCTAAATGGAGAAATCTATGAGCAGCTAAATGTAGACGACCGATACATCG
TTCTACGGTATTTTATGACCTCAGCTAGCTTCCATTTTCACACAGATAATACTGTTTAAG
AAGCTCTATGTTTGTTGGTACTTGTGTTATATTTAAACAAGATATGCTGTCCTTCCCCTC
CCAAAATTGTTTTAGGTGCTTAAACTTCACCCTTGTTTAGCCCCTATTAAGGTTGCTTTG
GATGTGGGAAGAGGACCAACAGTGGAACTAAGACAGGTGGGTTAAACAAGTTTTAATGTT
GTGATTTCAATTATAACCATTATTTGGCCTGGTTATATGGAAACTGTACAGTCCTCATGG
GAACAACTTTATGCCAAATATGATGAAATGAGTATCCTCTTCACAGTGCTGATTACCGAA
GCTACTTGGGAGAATGGATTAATACATCTGAGAAGTAGAGACACCACAATGAGGGAAATG
ATGCATATATCCAAAGTAAAAGACTTTTTAACTAAATATATATCATCAGCTAAGAATGTA
TAGATTTTAATATTGGTATAATAAATACTCCTCTTTCCTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTAAACTCATCTCACTTAGAGGAAAAACCAAAGCCCCTAAAGTGTTTTACAGATTTT
TTTCCCTTTTTGACCTCCCGTTCCTCTCTACCTCACTCGATCTTCTCCCAGAAGCACAGA
TCTCATTGTTTCTGTGCTCTGAGCTTAGCCTTGTCATTAGTTCTCCCCTTTGTCTAGAAT
GCGGTTGCTCCAAATCCATGTCTTGTCCCTCAGCTGCCTTCAAGTCTGTTCAAACGTCAC
CCCAAGTGATGAGCCATGTGGCCCATACTGGGTAGGGAAAGCAGTGATGACTAGAAGGGG
CATTTCACTGAGGGAAAATGGAGCTGTCAGAAAATGGGAGAGTATCAAGTGCACTTACTT
CTGCAGAACATCTAAATGGAGAAATCTATGAGCAGCTAAATGTAGACGACCGATACATCG
TTCTACGGTATTTTATGACCTCAGCTAGCTTCCATTTTCACACAGATAATACTGTTTAAG
AAGCTCTATGTTTGTTGGTACTTGTGTTATATTTAAACAAGATATGCTGTCCTTCCCCTC
CCAAAATTGTTTTAGGTGCTTAAACTTCACCCTTGTTTAGCCCCTATTAAGGTTGCTTTG
GATGTGGGAAGAGGACCAACAGTGGAACTAAGACAGGTGGGTTAAACAAGTTTTAATGTT
GTGATTTCAATTATAACCATTATTTGGCCTGGTTATATGGAAACTGTACAGTCCTCATGG
GAACAACTTTATGCCAAATATGATGAAATGAGTATCCTCTTCACAGTGCTGATTACCGAA
GCTACTTGGGAGAATGGATTAATACATCTGAGAAGTAGAGACACCACAATGAGGGAAATG
ATGCATATATCCAAAGTAAAAGACTTTTTAACTAAATATATATCATCAGCTAAGAATGTA
TAGATTTTAATATTGGTATAATAAATACTCCTCTTTCCTAAAAAAAAA

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               243-684, gnl|bosTau2|chr19 (42610936-42610525)
               

               
               243-684, gnl|Hg17|chr17 (59910214-59909462)
               


               
               685-948, gnl|bosTau2|chr8 (24684693-24684956)
               

               
               685-948, gnl|Hg17|chr17 (59906920-59904364)
               

               
               685-948, gnl|Mm7|chr11 (106881745-106877315)
               


               
               722-941, gnl|bosTau2|chr19 (42604867-42604648)
               

               
               722-941, gnl|Hg17|chr17 (59904584-59904364)
               

               
               722-941, gnl|Mm7|chr11 (106877526-106877313)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               243-684, gnl|bosTau2|chr19 (42610936-42610525)
               

               
               243-684, gnl|Hg17|chr17 (59910214-59909462)
               


               
               685-948, gnl|bosTau2|chr8 (24684693-24684956)
               

               
               685-948, gnl|Hg17|chr17 (59906920-59904364)
               

               
               685-948, gnl|Mm7|chr11 (106881745-106877315)
               


               
               722-941, gnl|bosTau2|chr19 (42604867-42604648)
               

               
               722-941, gnl|Hg17|chr17 (59904584-59904364)
               

               
               722-941, gnl|Mm7|chr11 (106877526-106877313)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	243-684, gnl\|bosTau2\|chr19 (42610936-42610525)
	243-684, gnl\|Hg17\|chr17 (59910214-59909462)

	685-948, gnl\|bosTau2\|chr8 (24684693-24684956)
	685-948, gnl\|Hg17\|chr17 (59906920-59904364)
	685-948, gnl\|Mm7\|chr11 (106881745-106877315)

	722-941, gnl\|bosTau2\|chr19 (42604867-42604648)
	722-941, gnl\|Hg17\|chr17 (59904584-59904364)
	722-941, gnl\|Mm7\|chr11 (106877526-106877313)