Non-Coding RNA Search

Ss1.1-Pig3-SRG8024L20.5

Sequence:


               
               AAGGGGAAAAGGAAGGCTGTACAACAAAGTGTAACATGTGCTGCTATTGCTATTTGTCTA
AACAAAGAGGGAAAAGAATTGGATCTGCTCACCTCATCCTTGGCACTCCACCGCACAGCA
CACAGCCAAAGGACTTGCCTTTCCTCGAGATACCCCACTGGCACTGCCCCTCCTCCTGCC
CCGTGCCCTCCTGCTCACCCTTGCAGAGATGTTTCATACGTACACACATACTTCCAAACA
TATAGAAATACAAAGAGCATACTACGCATGCTCTTCTGCACTTTGCTTTTTTGACTTAAT
ACACACTTGCACATAAAGGGCTGTCTGGTTCTAATTTACGACCGTATACTTCTCCACTGA
ATGGATAAATCATAATTTATTTAATCAGTCCCACTGATGGATATTTCCATTGTTTCCTAC
CTTTTGCTATTATAAATAATGCTGTAACGAATACCCTTGGGCATATTTCACATGGTACCT
ATGGGATTATGCATGTGGGGTAAAATCTTAGGAACAGTAGTAGCTTGTGGGGAGAGTGAC
ACGGTGGATGGGCACAGGACTGGGAGACTTCCCATTGTATTCCCTTTTGTGTCTCTTTGA
ATTTTGTACCATATGTATTATCTATTCAAAAAAATAAAATATTTTTAAATACAGCTGCTG
GACATGGACTGCTTAGACACTCCCTTTATATATTTGTCTGACTATATTTTCCAGTTAAAG
CCAGATGATAATTATTCTCAAACTACTTCCTTTAAGCAGCAAACTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGGAAAAGGAAGGCTGTACAACAAAGTGTAACATGTGCTGCTATTGCTATTTGTCTA
AACAAAGAGGGAAAAGAATTGGATCTGCTCACCTCATCCTTGGCACTCCACCGCACAGCA
CACAGCCAAAGGACTTGCCTTTCCTCGAGATACCCCACTGGCACTGCCCCTCCTCCTGCC
CCGTGCCCTCCTGCTCACCCTTGCAGAGATGTTTCATACGTACACACATACTTCCAAACA
TATAGAAATACAAAGAGCATACTACGCATGCTCTTCTGCACTTTGCTTTTTTGACTTAAT
ACACACTTGCACATAAAGGGCTGTCTGGTTCTAATTTACGACCGTATACTTCTCCACTGA
ATGGATAAATCATAATTTATTTAATCAGTCCCACTGATGGATATTTCCATTGTTTCCTAC
CTTTTGCTATTATAAATAATGCTGTAACGAATACCCTTGGGCATATTTCACATGGTACCT
ATGGGATTATGCATGTGGGGTAAAATCTTAGGAACAGTAGTAGCTTGTGGGGAGAGTGAC
ACGGTGGATGGGCACAGGACTGGGAGACTTCCCATTGTATTCCCTTTTGTGTCTCTTTGA
ATTTTGTACCATATGTATTATCTATTCAAAAAAATAAAATATTTTTAAATACAGCTGCTG
GACATGGACTGCTTAGACACTCCCTTTATATATTTGTCTGACTATATTTTCCAGTTAAAG
CCAGATGATAATTATTCTCAAACTACTTCCTTTAAGCAGCAAACTTAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11640570|gb|AAG39282.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11640570|gb|AAG39282.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               189-323, - strand, RNAz p=0.981868

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-323, - strand, RNAz p=0.981868

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-748, gnl|bosTau2|chr10 (61035404-61036178)
               

               
               4-748, gnl|Hg17|chr14 (74035299-74034540)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-748, gnl|bosTau2|chr10 (61035404-61036178)
               

               
               4-748, gnl|Hg17|chr14 (74035299-74034540)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               ctl (0.153069)
               

               
               nmm (0.132802)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               ctl (0.153069)
               

               
               nmm (0.132802)
               

               
               eje (0.0988338)

	4-748, gnl\|bosTau2\|chr10 (61035404-61036178)
	4-748, gnl\|Hg17\|chr14 (74035299-74034540)

	aor (0.195274)
	cmu (0.186393)
	gul (0.177588)
	eye (0.170503)
	cki (0.165235)
	ctl (0.153069)
	nmm (0.132802)
	eje (0.0988338)