Ss1.1-Pig3-SRG8024M12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACCAATGGTGCCCCAGAACAGATAGGCCTTGATGAGAGTGGCGGTGGTGGTGGCAGTGA CCTTGGAGAGGCCCCCACACGTACCGCTCCTGGGGAACCTCGCTCTGGACGGGGCCCACT CAGCTCTGCACCAGAGATTGTACACGAGGACTTGAAGATGGGGTCTGACGGGGAAAGTGA CCAGGCTTCAGCCACGTCCTCGGATGAGGTGCAGTCACCAGTGAGGGTGCGCATGCGCAA CCATCCCCCACGCAAGATCTCCACCGAGGACATCAACAAGCGCCTGTCACTACCAGCCGA CATCCGGCTGCCCGAGGGCTACCTTGAGAAGCTGACCCTCAATAGCCCCATCTTCGACAA GCCGCTCAGCCGCCGCCTCCGGCGTGTCAGCCTGTCTGAGATCGGCTTTGGGAAACTGGA GACTTACATCAAGCTGGACAAGCTGGGAGAGGGCACCTATGCCACTGTCTACAAAGGCAA AAGCAAGCTCACAGACAACCTCGTGGCACTCAAGGAGATCAGACTGGAACACGAAGAGGG GGCACCTTGCACCGCCATCCGGGAAGTGTCCCTGCTCAAGGACCTCAAACATGCCAATAT CGTCACGCTACATGATATTATCCACACGGAGAAGTCCCTCACCCTTGTCTTTGAGTACCT GGACAAGGACCTGAAGCAGTACCTGGATGACTGTGGGAACGTCATCAACATGCACAACGT GAAACTGTTCCTGTTCCAGCTGCTCCGTGGCCTGGCCTACTGCCACCGGCAGAAGGTGCT ACACCGAGACCTCAAGCCCCAGAACCTGCTCATAAACGAGAGAGGAGAGCTCAAGCTGGC CGACTTCGGCCTGGCCCGGGCCAAGTCAATTCCAACGAAGACCTACTCCAATGAGGTGGT AACCCTGTGGTACCGTCCCCCCGACATCCTGCTCGGATCCACGGACTATTCCACTCAGAT TGACATGTGGGGTGTGGGCTGTATCTTCTATGAGATGGCCACGGGCCGGCCCCTCTTCCC GGGCTCCACGGTGGAGGAACAGCTGCACTTCATCTTCCGCATCTTAGGAACCCCAACTGA GGAGACGTGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACCAATGGTGCCCCAGAACAGATAGGCCTTGATGAGAGTGGCGGTGGTGGTGGCAGTGA CCTTGGAGAGGCCCCCACACGTACCGCTCCTGGGGAACCTCGCTCTGGACGGGGCCCACT CAGCTCTGCACCAGAGATTGTACACGAGGACTTGAAGATGGGGTCTGACGGGGAAAGTGA CCAGGCTTCAGCCACGTCCTCGGATGAGGTGCAGTCACCAGTGAGGGTGCGCATGCGCAA CCATCCCCCACGCAAGATCTCCACCGAGGACATCAACAAGCGCCTGTCACTACCAGCCGA CATCCGGCTGCCCGAGGGCTACCTTGAGAAGCTGACCCTCAATAGCCCCATCTTCGACAA GCCGCTCAGCCGCCGCCTCCGGCGTGTCAGCCTGTCTGAGATCGGCTTTGGGAAACTGGA GACTTACATCAAGCTGGACAAGCTGGGAGAGGGCACCTATGCCACTGTCTACAAAGGCAA AAGCAAGCTCACAGACAACCTCGTGGCACTCAAGGAGATCAGACTGGAACACGAAGAGGG GGCACCTTGCACCGCCATCCGGGAAGTGTCCCTGCTCAAGGACCTCAAACATGCCAATAT CGTCACGCTACATGATATTATCCACACGGAGAAGTCCCTCACCCTTGTCTTTGAGTACCT GGACAAGGACCTGAAGCAGTACCTGGATGACTGTGGGAACGTCATCAACATGCACAACGT GAAACTGTTCCTGTTCCAGCTGCTCCGTGGCCTGGCCTACTGCCACCGGCAGAAGGTGCT ACACCGAGACCTCAAGCCCCAGAACCTGCTCATAAACGAGAGAGGAGAGCTCAAGCTGGC CGACTTCGGCCTGGCCCGGGCCAAGTCAATTCCAACGAAGACCTACTCCAATGAGGTGGT AACCCTGTGGTACCGTCCCCCCGACATCCTGCTCGGATCCACGGACTATTCCACTCAGAT TGACATGTGGGGTGTGGGCTGTATCTTCTATGAGATGGCCACGGGCCGGCCCCTCTTCCC GGGCTCCACGGTGGAGGAACAGCTGCACTTCATCTTCCGCATCTTAGGAACCCCAACTGA GGAGACGTGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 150-269, + strand, RNAz p=0.523816 | |
| 728-846, - strand, RNAz p=0.672639 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 150-269, + strand, RNAz p=0.523816 | |
| 728-846, - strand, RNAz p=0.672639 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 130-269, gnl|bosTau2|chr27 (15993333-15993472) | |
| 130-269, gnl|Hg17|chrX (46840033-46840172) | |
| 130-269, gnl|Mm7|chrX (19127184-19127322) | |
| 422-1092, gnl|bosTau2|chr5 (32366494-32367167) | |
| 422-1092, gnl|Hg17|chr12 (54647067-54651189) | |
| 422-1092, gnl|Mm7|chr10 (128206588-128201349) | |
| 450-585, gnl|bosTau2|chr16 (1385684-1385819) | |
| 450-585, gnl|canFam2|chr38 (4996489-4996616) | |
| 450-585, gnl|danRer3|chr4 (4389634-4389760) | |
| 450-585, gnl|dasNov1|scaffold_60900 (9241-9114) | |
| 450-585, gnl|echTel1|scaffold_297484 (2610-2738) | |
| 450-585, gnl|fr1|chrUn (172961315-172961437) | |
| 450-585, gnl|galGal2|chr26 (766704-766831) | |
| 450-585, gnl|hg17|chr1 (202226844-202226971) | |
| 450-585, gnl|Hg17|chr1 (202226848-202226984) | |
| 450-585, gnl|loxAfr1|scaffold_152956 (921-794) | |
| 450-585, gnl|mm7|chr1 (132014788-132014661) | |
| 450-585, gnl|Mm7|chr1 (132014782-132014634) | |
| 450-585, gnl|monDom2|scaffold_13 (7236083-7236210) | |
| 450-585, gnl|oryCun1|scaffold_211752 (21357-21473) | |
| 450-585, gnl|panTro1|chr1 (185184796-185184923) | |
| 450-585, gnl|rheMac2|chr1 (164889050-164888923) | |
| 450-585, gnl|rn3|chr13 (45015260-45015133) | |
| 450-585, gnl|tetNig1|chr11 (10595262-10595388) | |
| 450-585, gnl|xenTro1|scaffold_19 (3628560-3628682) | |
| 728-849, gnl|bosTau2|chr16 (1386935-1387056) | |
| 728-849, gnl|canFam2|chr38 (4998035-4998162) | |
| 728-849, gnl|danRer3|chr11 (41216115-41215988) | |
| 728-849, gnl|dasNov1|scaffold_46068 (10947-11074) | |
| 728-849, gnl|echTel1|scaffold_297484 (3706-3833) | |
| 728-849, gnl|fr1|chrUn (172962443-172962570) | |
| 728-849, gnl|galGal2|chr26 (767277-767404) | |
| 728-849, gnl|hg17|chr1 (202228578-202228705) | |
| 728-849, gnl|Hg17|chr1 (202228582-202228703) | |
| 728-849, gnl|loxAfr1|scaffold_79516 (4221-4348) | |
| 728-849, gnl|mm7|chr1 (132013442-132013315) | |
| 728-849, gnl|Mm7|chr1 (132013436-132013315) | |
| 728-849, gnl|monDom2|scaffold_13 (7240461-7240588) | |
| 728-849, gnl|oryCun1|scaffold_211752 (21689-21816) | |
| 728-849, gnl|panTro1|chr1 (185186569-185186696) | |
| 728-849, gnl|rheMac2|chr1 (164887124-164886997) | |
| 728-849, gnl|rn3|chr13 (45014017-45013890) | |
| 728-849, gnl|tetNig1|chr11 (10596164-10596291) | |
| 728-849, gnl|xenTro1|scaffold_19 (3631352-3631479) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 130-269, gnl|bosTau2|chr27 (15993333-15993472) | |
| 130-269, gnl|Hg17|chrX (46840033-46840172) | |
| 130-269, gnl|Mm7|chrX (19127184-19127322) | |
| 422-1092, gnl|bosTau2|chr5 (32366494-32367167) | |
| 422-1092, gnl|Hg17|chr12 (54647067-54651189) | |
| 422-1092, gnl|Mm7|chr10 (128206588-128201349) | |
| 450-585, gnl|bosTau2|chr16 (1385684-1385819) | |
| 450-585, gnl|canFam2|chr38 (4996489-4996616) | |
| 450-585, gnl|danRer3|chr4 (4389634-4389760) | |
| 450-585, gnl|dasNov1|scaffold_60900 (9241-9114) | |
| 450-585, gnl|echTel1|scaffold_297484 (2610-2738) | |
| 450-585, gnl|fr1|chrUn (172961315-172961437) | |
| 450-585, gnl|galGal2|chr26 (766704-766831) | |
| 450-585, gnl|hg17|chr1 (202226844-202226971) | |
| 450-585, gnl|Hg17|chr1 (202226848-202226984) | |
| 450-585, gnl|loxAfr1|scaffold_152956 (921-794) | |
| 450-585, gnl|mm7|chr1 (132014788-132014661) | |
| 450-585, gnl|Mm7|chr1 (132014782-132014634) | |
| 450-585, gnl|monDom2|scaffold_13 (7236083-7236210) | |
| 450-585, gnl|oryCun1|scaffold_211752 (21357-21473) | |
| 450-585, gnl|panTro1|chr1 (185184796-185184923) | |
| 450-585, gnl|rheMac2|chr1 (164889050-164888923) | |
| 450-585, gnl|rn3|chr13 (45015260-45015133) | |
| 450-585, gnl|tetNig1|chr11 (10595262-10595388) | |
| 450-585, gnl|xenTro1|scaffold_19 (3628560-3628682) | |
| 728-849, gnl|bosTau2|chr16 (1386935-1387056) | |
| 728-849, gnl|canFam2|chr38 (4998035-4998162) | |
| 728-849, gnl|danRer3|chr11 (41216115-41215988) | |
| 728-849, gnl|dasNov1|scaffold_46068 (10947-11074) | |
| 728-849, gnl|echTel1|scaffold_297484 (3706-3833) | |
| 728-849, gnl|fr1|chrUn (172962443-172962570) | |
| 728-849, gnl|galGal2|chr26 (767277-767404) | |
| 728-849, gnl|hg17|chr1 (202228578-202228705) | |
| 728-849, gnl|Hg17|chr1 (202228582-202228703) | |
| 728-849, gnl|loxAfr1|scaffold_79516 (4221-4348) | |
| 728-849, gnl|mm7|chr1 (132013442-132013315) | |
| 728-849, gnl|Mm7|chr1 (132013436-132013315) | |
| 728-849, gnl|monDom2|scaffold_13 (7240461-7240588) | |
| 728-849, gnl|oryCun1|scaffold_211752 (21689-21816) | |
| 728-849, gnl|panTro1|chr1 (185186569-185186696) | |
| 728-849, gnl|rheMac2|chr1 (164887124-164886997) | |
| 728-849, gnl|rn3|chr13 (45014017-45013890) | |
| 728-849, gnl|tetNig1|chr11 (10596164-10596291) | |
| 728-849, gnl|xenTro1|scaffold_19 (3631352-3631479) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| jca (0.22792) | |
| cag (0.151194) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.22792) | |
| cag (0.151194) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| ldo (0.0970026) |