Non-Coding RNA Search

Ss1.1-Pig3-SRG8024M21.3

Sequence:


               
               TCACCTCACGATGATGGAGTTTAATGTAAACCGTGCAGACCCAGGGTTGCCTGCCAAGCA
CGGCCCCAATGCCCAGAAGAGTGGGCTGCTGACCACCCAGCCCTTGCTCAAGCAGAAGGC
CTCTGCTGCTGCTTATCCCGGAGACCCCCAACTTTCCACAGTTAGCAGAAGAACAAACTA
CAACCCAGACCCAGCCAGAGAGCCCAGGATCCCGAAAAGCCGAGCATCACCATTGGAGAA
GGGAGGAGAGAATCAGCAGCGACATCCAGAGCCTGAGCGGGAAGTTGGAAGGGCTGGCTG
TTGTGTTTTTTTGTTGTTGTGGTGGTGTATTTTATTAAATTTTTTCCTTTTCTTTTCCTA
CTTATGTTGATGGACAACATATTAAGCCCTGACCTGTGCTCATCAGGTGTGTCAGGGTAG
AGAGGCACCCCTGCACCCCCCAGACTACAGGATTTATGTTTGGGTCTAGCTTAGAACCTT
CCCTTAAAGCAGGGCTACGCTGCCAGGGGTTTGCCTTTTTAAAAAGAATATTCTCTAGAA
TCTGCAGTCTTATTACAAAGGATCAGGTCTGCTCTTAGTTGTGTTGTGTTTTGGTTTCTC
CCATCTTTAAAAATTCGTCCATGAGGAAAGGCAGAAGCTGTTGTGTGTGTGCTGCACTTG
AGCCCATTCTGTGCAGATGTGAGGGTGTCACGTGTATGCACACACGGTTGTGGAGATGGG
GTATACTGCTCCCCACTTCAGCCCCAGCCCTGGTTTTCCTGTCTGTGCAGTTAGGAACTT
AATTTAAAATCCTTATTTTGTAGGGCCACCTTTGAATACACTGCTGCAACATTCTAATAA
AGGCTCATTTAACCCCCCCTCTCATGTTGTGTGAATATCAGTGTTTAGAAGACATTTTTG
ACATACAGTAGAAGACCTGATTTTGCAAAGTGTTCTAATTTTTTGTTGTGTAAAACCCTA
AATTTCTCATTGATTTTTGTTTTGAGTGCATAATGTAGGTGGGCTAAAGAAGGGGAGGCC
AGAAAAAGGGTGGCTTTCATTCCAAGATCCAGGGATTTGGGGGAAAAGGAAAAATTGCCC
TTTGGGGGAGGGGGGAAAAGGGTGTGTTTTTCCCCCAAAAATCAAGAGTATGCAAGCTTT
TTTATTCCTCAAATTTTTCTGTGTGCCTGGCAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACCTCACGATGATGGAGTTTAATGTAAACCGTGCAGACCCAGGGTTGCCTGCCAAGCA
CGGCCCCAATGCCCAGAAGAGTGGGCTGCTGACCACCCAGCCCTTGCTCAAGCAGAAGGC
CTCTGCTGCTGCTTATCCCGGAGACCCCCAACTTTCCACAGTTAGCAGAAGAACAAACTA
CAACCCAGACCCAGCCAGAGAGCCCAGGATCCCGAAAAGCCGAGCATCACCATTGGAGAA
GGGAGGAGAGAATCAGCAGCGACATCCAGAGCCTGAGCGGGAAGTTGGAAGGGCTGGCTG
TTGTGTTTTTTTGTTGTTGTGGTGGTGTATTTTATTAAATTTTTTCCTTTTCTTTTCCTA
CTTATGTTGATGGACAACATATTAAGCCCTGACCTGTGCTCATCAGGTGTGTCAGGGTAG
AGAGGCACCCCTGCACCCCCCAGACTACAGGATTTATGTTTGGGTCTAGCTTAGAACCTT
CCCTTAAAGCAGGGCTACGCTGCCAGGGGTTTGCCTTTTTAAAAAGAATATTCTCTAGAA
TCTGCAGTCTTATTACAAAGGATCAGGTCTGCTCTTAGTTGTGTTGTGTTTTGGTTTCTC
CCATCTTTAAAAATTCGTCCATGAGGAAAGGCAGAAGCTGTTGTGTGTGTGCTGCACTTG
AGCCCATTCTGTGCAGATGTGAGGGTGTCACGTGTATGCACACACGGTTGTGGAGATGGG
GTATACTGCTCCCCACTTCAGCCCCAGCCCTGGTTTTCCTGTCTGTGCAGTTAGGAACTT
AATTTAAAATCCTTATTTTGTAGGGCCACCTTTGAATACACTGCTGCAACATTCTAATAA
AGGCTCATTTAACCCCCCCTCTCATGTTGTGTGAATATCAGTGTTTAGAAGACATTTTTG
ACATACAGTAGAAGACCTGATTTTGCAAAGTGTTCTAATTTTTTGTTGTGTAAAACCCTA
AATTTCTCATTGATTTTTGTTTTGAGTGCATAATGTAGGTGGGCTAAAGAAGGGGAGGCC
AGAAAAAGGGTGGCTTTCATTCCAAGATCCAGGGATTTGGGGGAAAAGGAAAAATTGCCC
TTTGGGGGAGGGGGGAAAAGGGTGTGTTTTTCCCCCAAAAATCAAGAGTATGCAAGCTTT
TTTATTCCTCAAATTTTTCTGTGTGCCTGGCAAATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               97-190, - strand, RNAz p=0.981345

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               97-190, - strand, RNAz p=0.981345

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1176, gnl|bosTau2|chr7 (3961262-3960079)
               

               
               1-1176, gnl|Hg17|chr19 (19477799-19479132)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1176, gnl|bosTau2|chr7 (3961262-3960079)
               

               
               1-1176, gnl|Hg17|chr19 (19477799-19479132)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ill (0.351185)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               eye (0.170503)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               eye (0.170503)
               

               
               ldo (0.0970026)

	1-1176, gnl\|bosTau2\|chr7 (3961262-3960079)
	1-1176, gnl\|Hg17\|chr19 (19477799-19479132)

	ill (0.351185)
	cga (0.279096)
	fce (0.271592)
	eye (0.170503)
	ldo (0.0970026)