Ss1.1-Pig3-SRG8024N04.3
|
GAAGGAAAAATATTTGTCTTCTCCGGGTTGTAGGCCTTGCTCAGTGTACACAGGTCCACA
CCCTAAGCTTTCCCTGTCCTTGAATCTGGTCAGTGAATGTGGGTTTCAGTCCACAGGTCC
TTCTAACTTGTGTTTCTGTAGCGCACGTGCTGTCTTTTATCCTCAACAGTGATGCAGCTC
GGCCAATAATACCTGCAGCTATCTGCCACTCAGCCTGATGTGAAATGTTACAATTAACTC
AGTGACAATTTTTGTGAAAGATGGGCAACTTATCCTGCTGGGTGGGAAAAGTTGAAACTA
TGCTCATTCAAAATTTCGAAGGGGTATTAATTCTTGTAGCATTAATGGGAAAAACAATTT
TTTTTTAACTGTTAAGGAGGTAGCATTGATTGTGTCTACAAAGCCTTTGGTATCTCTGAG
TGCTCCTTGCCCTTGAGGCTCTGGGTTCAACTGAGTCTCTGCCATTTCCCCCGCTGGCCC
CGAAGGGTGGAGGGTGAGATGGGGTGCAGGGTTGGGGGAAGGCAACGCCATTACCAGGCA
TGGAATCTGTTGCTGGAACAGGTTGGGAGCCTACCTAGGGGTGACCAGAGCGCAAGGGGG
CAGGCTGGGAGTGGTCATGGGTTTGCGGGTTTCCCGCAGAATGTTCAGGAATGTCTTGCC
CAGCTGCTTTGGTGCTGTACTATGTCACCTCACTGAAGGCGTGTCAGATTGACCCAGCTG
GGGAGGAGTCTGACACCAGCCCCAGGTGTTGGTGAGACATTTATCTTAACTTGGAGAAGC
AGGGGCAACTGATGGTCCTTCAGAACATAAGCCTGGATCCCAGCCTGTCTTTGCAGCAGT
TGGCAGTGGGGCTGTGGCTGGAAGGGAGGCCAACTGGCTCAGCTTCTGTGCCAGACACTC
CTGAGCGTCCCCTAAAGGTCCTTCCAGCATCAGGTCCTTGCTGTAGCCTGGCCCCAGCGC
CAGTTTCTATGGCAACCTTCGTGATTATTAAAGAACACTGTCAGTTGTATGAAAATGTGC
TCAAATGAAGAGCTGCTTCAGAAGGCAGGGATTGGAACCGCGTGTAGCAAGGCCGTTAAT
TCATAGAGAAACCACATTCAGAAGGAGATCACGCATCTGTTAAATAGAATACCTCAACTT
TATATTTTTTGGAGAGAAATAATAGTTATAAGTGTTGTCTTTATTTTTTTACCTAATTAC
CTGAAAGCATATACCAAAGGCTGATGTCTGTATATTGGGCAAAGGGTCAGTATGATGTTT
TTCAGTGATTTGTTTTCTTTTTACCAGCTATTTTGCATTTAAAGTGAAAATTGTAAATGT
TTGAAATAAATG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAGGAAAAATATTTGTCTTCTCCGGGTTGTAGGCCTTGCTCAGTGTACACAGGTCCACA
CCCTAAGCTTTCCCTGTCCTTGAATCTGGTCAGTGAATGTGGGTTTCAGTCCACAGGTCC
TTCTAACTTGTGTTTCTGTAGCGCACGTGCTGTCTTTTATCCTCAACAGTGATGCAGCTC
GGCCAATAATACCTGCAGCTATCTGCCACTCAGCCTGATGTGAAATGTTACAATTAACTC
AGTGACAATTTTTGTGAAAGATGGGCAACTTATCCTGCTGGGTGGGAAAAGTTGAAACTA
TGCTCATTCAAAATTTCGAAGGGGTATTAATTCTTGTAGCATTAATGGGAAAAACAATTT
TTTTTTAACTGTTAAGGAGGTAGCATTGATTGTGTCTACAAAGCCTTTGGTATCTCTGAG
TGCTCCTTGCCCTTGAGGCTCTGGGTTCAACTGAGTCTCTGCCATTTCCCCCGCTGGCCC
CGAAGGGTGGAGGGTGAGATGGGGTGCAGGGTTGGGGGAAGGCAACGCCATTACCAGGCA
TGGAATCTGTTGCTGGAACAGGTTGGGAGCCTACCTAGGGGTGACCAGAGCGCAAGGGGG
CAGGCTGGGAGTGGTCATGGGTTTGCGGGTTTCCCGCAGAATGTTCAGGAATGTCTTGCC
CAGCTGCTTTGGTGCTGTACTATGTCACCTCACTGAAGGCGTGTCAGATTGACCCAGCTG
GGGAGGAGTCTGACACCAGCCCCAGGTGTTGGTGAGACATTTATCTTAACTTGGAGAAGC
AGGGGCAACTGATGGTCCTTCAGAACATAAGCCTGGATCCCAGCCTGTCTTTGCAGCAGT
TGGCAGTGGGGCTGTGGCTGGAAGGGAGGCCAACTGGCTCAGCTTCTGTGCCAGACACTC
CTGAGCGTCCCCTAAAGGTCCTTCCAGCATCAGGTCCTTGCTGTAGCCTGGCCCCAGCGC
CAGTTTCTATGGCAACCTTCGTGATTATTAAAGAACACTGTCAGTTGTATGAAAATGTGC
TCAAATGAAGAGCTGCTTCAGAAGGCAGGGATTGGAACCGCGTGTAGCAAGGCCGTTAAT
TCATAGAGAAACCACATTCAGAAGGAGATCACGCATCTGTTAAATAGAATACCTCAACTT
TATATTTTTTGGAGAGAAATAATAGTTATAAGTGTTGTCTTTATTTTTTTACCTAATTAC
CTGAAAGCATATACCAAAGGCTGATGTCTGTATATTGGGCAAAGGGTCAGTATGATGTTT
TTCAGTGATTTGTTTTCTTTTTACCAGCTATTTTGCATTTAAAGTGAAAATTGTAAATGT
TTGAAATAAATG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
36-149, gnl|bosTau2|chr3 (8520166-8520281) |
|
36-149, gnl|canFam2|chr17 (17726959-17727090) |
|
36-149, gnl|canFam2|chr7 (45853898-45853164) |
|
36-149, gnl|dasNov1|scaffold_51912 (5528-4716) |
|
36-149, gnl|hg17|chr1 (151253467-151254306) |
|
36-149, gnl|Hg17|chr1 (151253715-151253850) |
|
36-149, gnl|hg17|chr2 (19768472-19768605) |
|
36-149, gnl|loxAfr1|scaffold_52168 (3653-2765) |
|
36-149, gnl|mm7|chr3 (89995772-89995032) |
|
36-149, gnl|Mm7|chr3 (89995561-89995447) |
|
36-149, gnl|oryCun1|scaffold_207797 (26628-25728) |
|
36-149, gnl|panTro1|chr1 (133240208-133241052) |
|
36-149, gnl|panTro1|chr12 (20595522-20595655) |
|
36-149, gnl|rheMac2|chr1 (133007014-133007881) |
|
36-149, gnl|rheMac2|chr13 (19545019-19545144) |
|
36-149, gnl|rn3|chr2 (182029578-182028816) |
|
36-149, gnl|rn3|chr6 (32808581-32808487) |
| |
|
169-1331, gnl|bosTau2|chr3 (8520281-8521448) |
|
169-1331, gnl|Hg17|chr1 (151253850-151254985) |
|
169-1331, gnl|Mm7|chr3 (89995447-89994018) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
36-149, gnl|bosTau2|chr3 (8520166-8520281) |
|
36-149, gnl|canFam2|chr17 (17726959-17727090) |
|
36-149, gnl|canFam2|chr7 (45853898-45853164) |
|
36-149, gnl|dasNov1|scaffold_51912 (5528-4716) |
|
36-149, gnl|hg17|chr1 (151253467-151254306) |
|
36-149, gnl|Hg17|chr1 (151253715-151253850) |
|
36-149, gnl|hg17|chr2 (19768472-19768605) |
|
36-149, gnl|loxAfr1|scaffold_52168 (3653-2765) |
|
36-149, gnl|mm7|chr3 (89995772-89995032) |
|
36-149, gnl|Mm7|chr3 (89995561-89995447) |
|
36-149, gnl|oryCun1|scaffold_207797 (26628-25728) |
|
36-149, gnl|panTro1|chr1 (133240208-133241052) |
|
36-149, gnl|panTro1|chr12 (20595522-20595655) |
|
36-149, gnl|rheMac2|chr1 (133007014-133007881) |
|
36-149, gnl|rheMac2|chr13 (19545019-19545144) |
|
36-149, gnl|rn3|chr2 (182029578-182028816) |
|
36-149, gnl|rn3|chr6 (32808581-32808487) |
| |
|
169-1331, gnl|bosTau2|chr3 (8520281-8521448) |
|
169-1331, gnl|Hg17|chr1 (151253850-151254985) |
|
169-1331, gnl|Mm7|chr3 (89995447-89994018) |
|
sme (0.305437) |
|
ton (0.1755) |
|
cut (0.169924) |
|
cki (0.165235) |
|
ste (0.135208) |
|
pla (0.133672) |
|
ute (0.132784) |
|
sug (0.127291) |
|
cty (0.10408) |
|
sme (0.305437) |
|
ton (0.1755) |
|
cut (0.169924) |
|
cki (0.165235) |
|
ste (0.135208) |
|
pla (0.133672) |
|
ute (0.132784) |
|
sug (0.127291) |
|
cty (0.10408) |
