Non-Coding RNA Search

Ss1.1-Pig3-SRG8024N17.3

Sequence:


               
               GCGGCCGCCGGGCAGCGGTCTGGCCCCAGTAACTACTATGAACTGTTGGGGGTGCATCCT
GGTGCCAGTGCTGAAGAAGTTAAACGAGCTTTCTTCCAGTGCTGAAGAAGTTAAACGAGC
TTTCTTCTCCAAGTCCAAAGAGCCCTGCACAGCCGCTTTGTGGAGCTGAGTGAAGCGTAC
CAAGTGCTCAGCCGTGAGGAGAGCCGCCGTAGCTATGACCACCAGCTTCGTTCAGCGACT
TCCCCAAAGTCTCCAGGAACCGCAGCCTATCCCAGGTCTGCTCATCGGGCGCACAGCTCC
TGGGAGGACCCCAGTGCACGATACTGGGCCCAGTTTCCTGGTGTCAGGCCTCAGGGACCA
GAGTCAAGGCGGCAGCAGCAGAAACACAACCAGCGAACGCTGGGGTACTGCCTCTTGATC
ATGCTGGCAGGCATGTGCCTGCACTATGTTGCCTTCAGGAAGCTGGAACAGGTGCACCGT
AGCTTCATGGATGAAAAGGATCGGATCATCACAGCCATCTACAATGACACTCGGGCCCGG
GCCAGGGCCAAAAGAGCCAGGCTCCAGCAGGAGCAACAGCAGAGGCAGCTGCTGCAGCCA
ACACCTGGCCCTCCTGAAGGCCCAGGGATCGTGCCCCCCAGCCCCTGAGCAGCTCACCTG
GATGGGGCCCGGGGTGTGCTCCCTCTGTGCTTCCCTCCTGGTACGTCCCACTCCCAGAAA
CGCGGGCAATAAAGTGGTTCTCAGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCCGGGCAGCGGTCTGGCCCCAGTAACTACTATGAACTGTTGGGGGTGCATCCT
GGTGCCAGTGCTGAAGAAGTTAAACGAGCTTTCTTCCAGTGCTGAAGAAGTTAAACGAGC
TTTCTTCTCCAAGTCCAAAGAGCCCTGCACAGCCGCTTTGTGGAGCTGAGTGAAGCGTAC
CAAGTGCTCAGCCGTGAGGAGAGCCGCCGTAGCTATGACCACCAGCTTCGTTCAGCGACT
TCCCCAAAGTCTCCAGGAACCGCAGCCTATCCCAGGTCTGCTCATCGGGCGCACAGCTCC
TGGGAGGACCCCAGTGCACGATACTGGGCCCAGTTTCCTGGTGTCAGGCCTCAGGGACCA
GAGTCAAGGCGGCAGCAGCAGAAACACAACCAGCGAACGCTGGGGTACTGCCTCTTGATC
ATGCTGGCAGGCATGTGCCTGCACTATGTTGCCTTCAGGAAGCTGGAACAGGTGCACCGT
AGCTTCATGGATGAAAAGGATCGGATCATCACAGCCATCTACAATGACACTCGGGCCCGG
GCCAGGGCCAAAAGAGCCAGGCTCCAGCAGGAGCAACAGCAGAGGCAGCTGCTGCAGCCA
ACACCTGGCCCTCCTGAAGGCCCAGGGATCGTGCCCCCCAGCCCCTGAGCAGCTCACCTG
GATGGGGCCCGGGGTGTGCTCCCTCTGTGCTTCCCTCCTGGTACGTCCCACTCCCAGAAA
CGCGGGCAATAAAGTGGTTCTCAGAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10181196|ref|NP_065591.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10181196|ref|NP_065591.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               543-649, - strand, RNAz p=0.984778

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               543-649, - strand, RNAz p=0.984778

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               141-296, gnl|bosTau2|chr29 (33351984-33352139)
               

               
               141-296, gnl|Hg17|chr11 (63756507-63756662)
               

               
               141-296, gnl|Mm7|chr19 (6809700-6809545)
               


               
               543-745, gnl|bosTau2|chr29 (33353307-33353512)
               

               
               543-745, gnl|Hg17|chr11 (63758118-63758329)
               

               
               543-745, gnl|Mm7|chr19 (6807975-6807779)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-296, gnl|bosTau2|chr29 (33351984-33352139)
               

               
               141-296, gnl|Hg17|chr11 (63756507-63756662)
               

               
               141-296, gnl|Mm7|chr19 (6809700-6809545)
               


               
               543-745, gnl|bosTau2|chr29 (33353307-33353512)
               

               
               543-745, gnl|Hg17|chr11 (63758118-63758329)
               

               
               543-745, gnl|Mm7|chr19 (6807975-6807779)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	141-296, gnl\|bosTau2\|chr29 (33351984-33352139)
	141-296, gnl\|Hg17\|chr11 (63756507-63756662)
	141-296, gnl\|Mm7\|chr19 (6809700-6809545)

	543-745, gnl\|bosTau2\|chr29 (33353307-33353512)
	543-745, gnl\|Hg17\|chr11 (63758118-63758329)
	543-745, gnl\|Mm7\|chr19 (6807975-6807779)

	ton (0.1755)
	nje (0.16592)
	cag (0.151194)
	hlv (0.139256)
	ecc (0.115035)
	eje (0.0988338)