Ss1.1-Pig3-SRG8024N20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCACCAGTTACCTCCAGTCATTAAGAACATGGCCTTTCAGAAGTATTCAAACATGGAAC AATCTCTGTTCACTCGCTTTGTCCGTGTTGGAGTTCCCACTGTGGACCTTGATGCCCAGG GGAGGGCCAGAGCAAGCTTATGCAACCTCTACAACTGGCGATACAAGAATCTAGGAAACT TACCCCATGTGCAGCTTTTGCCAGAGTTTAGTACAGCAAATGCTGGCTTGCTCTATGACT TCCAGCTTATTAATGTTGAAGATTTTCAGGGAGTTGGAGAATCTGAGCCTAATCCTTACT TTTATCAGAATCTTGGAGAGGCAGAATATGTAGTGGCACTTTTTATGTACATGTGTTTAC TTGGTTACCCTGCTGACAAAATCAGTATTCTAACCACATATAATGGGCAAAAGCATCTTA TTCGGGACATCATCAACAGACGATGTGGGAGCAATCCATTGATTGGAAGACCAAATAAGG TGACAACTGTTGACAGATTTCAAGGTCAACAGAATGATTATATTCTTCTCTCTCTAGTAC GAACCAGGGCAGTGGGCCATCTGAGGGATGTTCGTCGCTTATTAGTGGCCATGTCTAGAG CCAGACTTGGACTTTATATCTTCGCCAGAGTATCCCTCTTCCAAAATTGTTTTGAACTAA CTCCAGCCTTCAGCCAGCTTACAGCCCGCCCACTTCATTTGCATATCATTCCAACAGAAC CTTTCCCAACCAGTAGAAAGAATGGAGAAAGACCATCTCACGAAGTACAGATAATAAAGA ATATGCCTCAGATGGCAAATTTTGTATACAACATGTATATGCATTTGATACAGACCACAC ATCATTATCATCAGACTTTATTACAGCTACCACCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCACCAGTTACCTCCAGTCATTAAGAACATGGCCTTTCAGAAGTATTCAAACATGGAAC AATCTCTGTTCACTCGCTTTGTCCGTGTTGGAGTTCCCACTGTGGACCTTGATGCCCAGG GGAGGGCCAGAGCAAGCTTATGCAACCTCTACAACTGGCGATACAAGAATCTAGGAAACT TACCCCATGTGCAGCTTTTGCCAGAGTTTAGTACAGCAAATGCTGGCTTGCTCTATGACT TCCAGCTTATTAATGTTGAAGATTTTCAGGGAGTTGGAGAATCTGAGCCTAATCCTTACT TTTATCAGAATCTTGGAGAGGCAGAATATGTAGTGGCACTTTTTATGTACATGTGTTTAC TTGGTTACCCTGCTGACAAAATCAGTATTCTAACCACATATAATGGGCAAAAGCATCTTA TTCGGGACATCATCAACAGACGATGTGGGAGCAATCCATTGATTGGAAGACCAAATAAGG TGACAACTGTTGACAGATTTCAAGGTCAACAGAATGATTATATTCTTCTCTCTCTAGTAC GAACCAGGGCAGTGGGCCATCTGAGGGATGTTCGTCGCTTATTAGTGGCCATGTCTAGAG CCAGACTTGGACTTTATATCTTCGCCAGAGTATCCCTCTTCCAAAATTGTTTTGAACTAA CTCCAGCCTTCAGCCAGCTTACAGCCCGCCCACTTCATTTGCATATCATTCCAACAGAAC CTTTCCCAACCAGTAGAAAGAATGGAGAAAGACCATCTCACGAAGTACAGATAATAAAGA ATATGCCTCAGATGGCAAATTTTGTATACAACATGTATATGCATTTGATACAGACCACAC ATCATTATCATCAGACTTTATTACAGCTACCACCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 364-481, - strand, RNAz p=0.682784 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 364-481, - strand, RNAz p=0.682784 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-161, gnl|bosTau2|chr10 (19202087-19201927) | |
| 1-161, gnl|canFam2|chr30 (5574110-5574334) | |
| 1-161, gnl|danRer3|chr19 (37437253-37437458) | |
| 1-161, gnl|dasNov1|scaffold_9226 (16931-17160) | |
| 1-161, gnl|echTel1|scaffold_320517 (112069-111841) | |
| 1-161, gnl|fr1|chrUn (63323107-63323323) | |
| 1-161, gnl|galGal2|chr5 (29117670-29117444) | |
| 1-161, gnl|hg17|chr15 (32954156-32954386) | |
| 1-161, gnl|Hg17|chr15 (32954305-32954152) | |
| 1-161, gnl|loxAfr1|scaffold_48296 (9015-8790) | |
| 1-161, gnl|mm7|chr2 (113854052-113854275) | |
| 1-161, gnl|Mm7|chr2 (113854194-113854049) | |
| 1-161, gnl|monDom2|scaffold_12 (9495014-9494786) | |
| 1-161, gnl|oryCun1|scaffold_197887 (11580-11352) | |
| 1-161, gnl|panTro1|chr16 (32739426-32739655) | |
| 1-161, gnl|rheMac2|chr7 (13220907-13221135) | |
| 1-161, gnl|rn3|chr3 (99872391-99872612) | |
| 1-161, gnl|tetNig1|chr10 (7881933-7881715) | |
| 1-161, gnl|xenTro1|scaffold_199 (622448-622234) | |
| 275-481, gnl|bosTau2|chr10 (19199272-19199070) | |
| 275-481, gnl|canFam2|chr30 (5569996-5570199) | |
| 275-481, gnl|danRer3|chr19 (37417674-37417872) | |
| 275-481, gnl|echTel1|scaffold_320517 (115632-115442) | |
| 275-481, gnl|fr1|chrUn (63321359-63321548) | |
| 275-481, gnl|galGal2|chr5 (29119463-29119251) | |
| 275-481, gnl|hg17|chr15 (32950230-32950433) | |
| 275-481, gnl|Hg17|chr15 (32950444-32950243) | |
| 275-481, gnl|mm7|chr2 (113850709-113850912) | |
| 275-481, gnl|Mm7|chr2 (113850923-113850722) | |
| 275-481, gnl|monDom2|scaffold_12 (9500602-9500400) | |
| 275-481, gnl|oryCun1|scaffold_94387 (5786-5989) | |
| 275-481, gnl|panTro1|chr16 (32735491-32735694) | |
| 275-481, gnl|rheMac2|chr7 (13216428-13216631) | |
| 275-481, gnl|rn3|chr3 (99868776-99868979) | |
| 275-481, gnl|tetNig1|chr10 (7883653-7883464) | |
| 275-481, gnl|xenTro1|scaffold_199 (623350-623147) | |
| 564-740, gnl|bosTau2|chr10 (19192438-19192262) | |
| 564-740, gnl|Hg17|chr15 (32942536-32942360) | |
| 564-740, gnl|Mm7|chr2 (113846816-113846640) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-161, gnl|bosTau2|chr10 (19202087-19201927) | |
| 1-161, gnl|canFam2|chr30 (5574110-5574334) | |
| 1-161, gnl|danRer3|chr19 (37437253-37437458) | |
| 1-161, gnl|dasNov1|scaffold_9226 (16931-17160) | |
| 1-161, gnl|echTel1|scaffold_320517 (112069-111841) | |
| 1-161, gnl|fr1|chrUn (63323107-63323323) | |
| 1-161, gnl|galGal2|chr5 (29117670-29117444) | |
| 1-161, gnl|hg17|chr15 (32954156-32954386) | |
| 1-161, gnl|Hg17|chr15 (32954305-32954152) | |
| 1-161, gnl|loxAfr1|scaffold_48296 (9015-8790) | |
| 1-161, gnl|mm7|chr2 (113854052-113854275) | |
| 1-161, gnl|Mm7|chr2 (113854194-113854049) | |
| 1-161, gnl|monDom2|scaffold_12 (9495014-9494786) | |
| 1-161, gnl|oryCun1|scaffold_197887 (11580-11352) | |
| 1-161, gnl|panTro1|chr16 (32739426-32739655) | |
| 1-161, gnl|rheMac2|chr7 (13220907-13221135) | |
| 1-161, gnl|rn3|chr3 (99872391-99872612) | |
| 1-161, gnl|tetNig1|chr10 (7881933-7881715) | |
| 1-161, gnl|xenTro1|scaffold_199 (622448-622234) | |
| 275-481, gnl|bosTau2|chr10 (19199272-19199070) | |
| 275-481, gnl|canFam2|chr30 (5569996-5570199) | |
| 275-481, gnl|danRer3|chr19 (37417674-37417872) | |
| 275-481, gnl|echTel1|scaffold_320517 (115632-115442) | |
| 275-481, gnl|fr1|chrUn (63321359-63321548) | |
| 275-481, gnl|galGal2|chr5 (29119463-29119251) | |
| 275-481, gnl|hg17|chr15 (32950230-32950433) | |
| 275-481, gnl|Hg17|chr15 (32950444-32950243) | |
| 275-481, gnl|mm7|chr2 (113850709-113850912) | |
| 275-481, gnl|Mm7|chr2 (113850923-113850722) | |
| 275-481, gnl|monDom2|scaffold_12 (9500602-9500400) | |
| 275-481, gnl|oryCun1|scaffold_94387 (5786-5989) | |
| 275-481, gnl|panTro1|chr16 (32735491-32735694) | |
| 275-481, gnl|rheMac2|chr7 (13216428-13216631) | |
| 275-481, gnl|rn3|chr3 (99868776-99868979) | |
| 275-481, gnl|tetNig1|chr10 (7883653-7883464) | |
| 275-481, gnl|xenTro1|scaffold_199 (623350-623147) | |
| 564-740, gnl|bosTau2|chr10 (19192438-19192262) | |
| 564-740, gnl|Hg17|chr15 (32942536-32942360) | |
| 564-740, gnl|Mm7|chr2 (113846816-113846640) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) | |
| ese (0.126502) |