Non-Coding RNA Search

Ss1.1-Pig3-SRG8024O06.5

Sequence:


               
               CCACTGCAGAAAAGGGGCTCTCTCCCTAGTTAATTAGGCTTCGCAAGCAATAATTTCTCA
ACAGCAAAACCATAACGGTGAGTTGAAAGGAGATGAATGGTGGAAAGAGTCACATCGGTA
CTTTTTCTTTCTGGATTTTCATCCCCAGCAATTTTAAATGTTTGAGACAACAGAATCGGC
CCTTTGTGCAAAGCAAGAACCAGGGACTCCTTGTGTGAAGTATTATATCTTGCTTTTTTT
TTCCAAAGCAGGCTTACCATGACTTTCACAGAGATTCATTTTGTTGTTGTTGTTGTTGAG
AAATGAGGGTCAATCGGAGAGTAGAATTTGGGTCAAATGCTAGTCAAAGTGCTCACGTAA
ATCAAAAAGTAAGATATTTTAAGGACATACCGATGTCTTTCTTTTCTGCTAATTTTATTC
TCCTAAGATACAGCCTAATACATTATAGAAATGGCTTTCGCCCTACGTGTGTTTCTAGTT
TGCCCACAGCAGAATTTTTGTCATTACATCCAGATGACAGGATATATTTTGTCCCTCACC
CTTGATTACACTGGATGGGTGTTGTTGAACTGGGGCACTGGTGCCTATAGTCAAGGCTCT
TTCCTATCAACGTGTCTGTCTACAGTTTGTTGTGTTTAAAAGTCCACTTTATTACAATCA
CCATGCTCCCCTGCCCCCACGGAATGGTGGTTGTATTGTTTCGTTCATGTCTGTGTGGGA
CACATCGCATCACATGGCAAACCACCTCCTTGTGGATGGGAGATAACTACTTACAAAACC
AGCTTGAAAACATTGTCTTCTGTACTCTGTCATCCTGTATCATAATGCAATTATGTGTAT
CATCACATGCTCATTTTTTTTCAAAAAAAAAAAAGGAGAAACCAGCAAATTCATGTTTGT
CCATAGAAGAATGTACTCAGAACGTTCTGTGTTGTGAAATAATGAGAACAGACCACGTTT
AAGATACCTACCTGCCACTTAAAATGACTTAGTTATAATTAGTAGTAGTCTAGACATTGC
TCTCGGTGTGTGGGGGTCAATTCAAAACGTCATATGCTTTTGACTAAATCACTCGGTTGC
ATTTGAAGAAAATACATGGGGATAAAGAAAAATATCATCTTTGGCCAAATCAAGCAGGCA
TCTTTTTCCTTTTCCTTGACACTTAGCTCATTATACTTGGTGATTGGATTACAAGCGCTG
TTTAAAAATACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACTGCAGAAAAGGGGCTCTCTCCCTAGTTAATTAGGCTTCGCAAGCAATAATTTCTCA
ACAGCAAAACCATAACGGTGAGTTGAAAGGAGATGAATGGTGGAAAGAGTCACATCGGTA
CTTTTTCTTTCTGGATTTTCATCCCCAGCAATTTTAAATGTTTGAGACAACAGAATCGGC
CCTTTGTGCAAAGCAAGAACCAGGGACTCCTTGTGTGAAGTATTATATCTTGCTTTTTTT
TTCCAAAGCAGGCTTACCATGACTTTCACAGAGATTCATTTTGTTGTTGTTGTTGTTGAG
AAATGAGGGTCAATCGGAGAGTAGAATTTGGGTCAAATGCTAGTCAAAGTGCTCACGTAA
ATCAAAAAGTAAGATATTTTAAGGACATACCGATGTCTTTCTTTTCTGCTAATTTTATTC
TCCTAAGATACAGCCTAATACATTATAGAAATGGCTTTCGCCCTACGTGTGTTTCTAGTT
TGCCCACAGCAGAATTTTTGTCATTACATCCAGATGACAGGATATATTTTGTCCCTCACC
CTTGATTACACTGGATGGGTGTTGTTGAACTGGGGCACTGGTGCCTATAGTCAAGGCTCT
TTCCTATCAACGTGTCTGTCTACAGTTTGTTGTGTTTAAAAGTCCACTTTATTACAATCA
CCATGCTCCCCTGCCCCCACGGAATGGTGGTTGTATTGTTTCGTTCATGTCTGTGTGGGA
CACATCGCATCACATGGCAAACCACCTCCTTGTGGATGGGAGATAACTACTTACAAAACC
AGCTTGAAAACATTGTCTTCTGTACTCTGTCATCCTGTATCATAATGCAATTATGTGTAT
CATCACATGCTCATTTTTTTTCAAAAAAAAAAAAGGAGAAACCAGCAAATTCATGTTTGT
CCATAGAAGAATGTACTCAGAACGTTCTGTGTTGTGAAATAATGAGAACAGACCACGTTT
AAGATACCTACCTGCCACTTAAAATGACTTAGTTATAATTAGTAGTAGTCTAGACATTGC
TCTCGGTGTGTGGGGGTCAATTCAAAACGTCATATGCTTTTGACTAAATCACTCGGTTGC
ATTTGAAGAAAATACATGGGGATAAAGAAAAATATCATCTTTGGCCAAATCAAGCAGGCA
TCTTTTTCCTTTTCCTTGACACTTAGCTCATTATACTTGGTGATTGGATTACAAGCGCTG
TTTAAAAATACA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               642-756, + strand, RNAz p=0.959551

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               642-756, + strand, RNAz p=0.959551

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_007249, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_007249, +

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               1-238, gnl|bosTau2|chr12 (24423439-24423677)
               

               
               1-238, gnl|canFam2|chr22 (30643877-30644970)
               

               
               1-238, gnl|dasNov1|scaffold_503 (110762-111812)
               

               
               1-238, gnl|echTel1|scaffold_325397 (4968-6027)
               

               
               1-238, gnl|hg17|chr13 (73159607-73160691)
               

               
               1-238, gnl|Hg17|chr13 (73160135-73159899)
               

               
               1-238, gnl|loxAfr1|scaffold_1620 (105967-104896)
               

               
               1-238, gnl|mm7|chr14 (94271155-94272106)
               

               
               1-238, gnl|Mm7|chr14 (94271626-94271393)
               

               
               1-238, gnl|monDom2|scaffold_8 (10158679-10159755)
               

               
               1-238, gnl|oryCun1|scaffold_215216 (130167-131238)
               

               
               1-238, gnl|panTro1|chr14 (55708908-55709993)
               

               
               1-238, gnl|rheMac2|chr17 (54139160-54140224)
               

               
               1-238, gnl|rn3|chr15 (83695789-83696784)
               


               
               290-1212, gnl|bosTau2|chr12 (24423669-24424584)
               

               
               290-1212, gnl|Hg17|chr13 (73159903-73158955)
               

               
               290-1212, gnl|Mm7|chr14 (94271397-94270499)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-238, gnl|bosTau2|chr12 (24423439-24423677)
               

               
               1-238, gnl|canFam2|chr22 (30643877-30644970)
               

               
               1-238, gnl|dasNov1|scaffold_503 (110762-111812)
               

               
               1-238, gnl|echTel1|scaffold_325397 (4968-6027)
               

               
               1-238, gnl|hg17|chr13 (73159607-73160691)
               

               
               1-238, gnl|Hg17|chr13 (73160135-73159899)
               

               
               1-238, gnl|loxAfr1|scaffold_1620 (105967-104896)
               

               
               1-238, gnl|mm7|chr14 (94271155-94272106)
               

               
               1-238, gnl|Mm7|chr14 (94271626-94271393)
               

               
               1-238, gnl|monDom2|scaffold_8 (10158679-10159755)
               

               
               1-238, gnl|oryCun1|scaffold_215216 (130167-131238)
               

               
               1-238, gnl|panTro1|chr14 (55708908-55709993)
               

               
               1-238, gnl|rheMac2|chr17 (54139160-54140224)
               

               
               1-238, gnl|rn3|chr15 (83695789-83696784)
               


               
               290-1212, gnl|bosTau2|chr12 (24423669-24424584)
               

               
               290-1212, gnl|Hg17|chr13 (73159903-73158955)
               

               
               290-1212, gnl|Mm7|chr14 (94271397-94270499)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-238, gnl\|bosTau2\|chr12 (24423439-24423677)
	1-238, gnl\|canFam2\|chr22 (30643877-30644970)
	1-238, gnl\|dasNov1\|scaffold_503 (110762-111812)
	1-238, gnl\|echTel1\|scaffold_325397 (4968-6027)
	1-238, gnl\|hg17\|chr13 (73159607-73160691)
	1-238, gnl\|Hg17\|chr13 (73160135-73159899)
	1-238, gnl\|loxAfr1\|scaffold_1620 (105967-104896)
	1-238, gnl\|mm7\|chr14 (94271155-94272106)
	1-238, gnl\|Mm7\|chr14 (94271626-94271393)
	1-238, gnl\|monDom2\|scaffold_8 (10158679-10159755)
	1-238, gnl\|oryCun1\|scaffold_215216 (130167-131238)
	1-238, gnl\|panTro1\|chr14 (55708908-55709993)
	1-238, gnl\|rheMac2\|chr17 (54139160-54140224)
	1-238, gnl\|rn3\|chr15 (83695789-83696784)

	290-1212, gnl\|bosTau2\|chr12 (24423669-24424584)
	290-1212, gnl\|Hg17\|chr13 (73159903-73158955)
	290-1212, gnl\|Mm7\|chr14 (94271397-94270499)