Ss1.1-Pig3-SRG8024O08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCCCCGGAAGCTGAAGCAGGTCCTCCGCCATGAGTTCTGGGCTTCCTTCGAGAACTTG CTGAGGCAGGGCGCTGAGGTGTACAAAGGGTACGTGGATGACCCGCGGAACACAGACAAC GCCTGGATCGAGACCGTGGCCGTGAGCATCCACTTCGCAGACCAGAGCGACCTGGAGCTG AAGAGGCTGAACTCTCACCTGTGCTCCCGCGACCCAGGGCTGTCCATCCGCTGGCAGCTG GTGGACCGGCGCATCCCGCTGTACGCCAACCACAAGGCCATCCTCCGGAAGGCGGCCGCC TTGTTCGGGGCTTACTACTGACCCGTGGCCACCCTGGAGCTCTGCAGGGGCCGGCGGGCT GGTCCGTCCACAGCCACTGGGAGACGTAGGACAGAGGCTGATACCAGCCACCTAGGCACA CGCAGCCCTGAACGTCCAGTGGGCAAGGGGCGCTGCCCGGGTACCGCCTGCCGCCCCTCA TGGCCAGCTTGTGAAGCAGAAGGCACAGGGTGCCCAGGGAGGAGAGCCGAGCAGGGCAAG GCTGGCTCTGGCCAGGTGGCAGCGCCTTCGGGTTGAGGTGGCTGCTGGGACCCCAGACAT TGCTGCCTCTCCCAGCCTGATGGTGGGCGTCCACTCTCTCCTGGCCACGTCGTAGGAGCA ACCATAAGGGGTGTGGCAGCCCAGCTGCACCTCTGAGAGAGTCAGGGTTCCCTTGCGGCC TCCTCCTCCTCTGGCCCATGCCCCCGAGAAGCCCTTGAGCGTGACCCAGCGTGGACCCTT GCCTGGCCTGTGGCGGCCTCCGTGGGGCCCGGGTCCCTTGGCTGTCAGGGCTGAGCCCCT CAGTGGGCCATCTCCCGAGATGCAGAAGGGTCTGCCTGTGTTTGGCCCCGGGCCCAGGCT GGGGGGACGCAGAGGCACAGGCGGCGGGGGCTCCCTGAACACGGCACCCCCCGCCTCTCC CCCGTTGAGCCCAGGGAGCAGCGGGGGGTGGGTCTGGTGAAGGGGGCACCCAGTTTAGCA TCAGCAGCTCACAGACCCATCAGCATAAACCGTCAGGAGCGGTCAGGCCGTGGAATGTTG TAAAAACCAGACATTAAATTGCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCCCCGGAAGCTGAAGCAGGTCCTCCGCCATGAGTTCTGGGCTTCCTTCGAGAACTTG CTGAGGCAGGGCGCTGAGGTGTACAAAGGGTACGTGGATGACCCGCGGAACACAGACAAC GCCTGGATCGAGACCGTGGCCGTGAGCATCCACTTCGCAGACCAGAGCGACCTGGAGCTG AAGAGGCTGAACTCTCACCTGTGCTCCCGCGACCCAGGGCTGTCCATCCGCTGGCAGCTG GTGGACCGGCGCATCCCGCTGTACGCCAACCACAAGGCCATCCTCCGGAAGGCGGCCGCC TTGTTCGGGGCTTACTACTGACCCGTGGCCACCCTGGAGCTCTGCAGGGGCCGGCGGGCT GGTCCGTCCACAGCCACTGGGAGACGTAGGACAGAGGCTGATACCAGCCACCTAGGCACA CGCAGCCCTGAACGTCCAGTGGGCAAGGGGCGCTGCCCGGGTACCGCCTGCCGCCCCTCA TGGCCAGCTTGTGAAGCAGAAGGCACAGGGTGCCCAGGGAGGAGAGCCGAGCAGGGCAAG GCTGGCTCTGGCCAGGTGGCAGCGCCTTCGGGTTGAGGTGGCTGCTGGGACCCCAGACAT TGCTGCCTCTCCCAGCCTGATGGTGGGCGTCCACTCTCTCCTGGCCACGTCGTAGGAGCA ACCATAAGGGGTGTGGCAGCCCAGCTGCACCTCTGAGAGAGTCAGGGTTCCCTTGCGGCC TCCTCCTCCTCTGGCCCATGCCCCCGAGAAGCCCTTGAGCGTGACCCAGCGTGGACCCTT GCCTGGCCTGTGGCGGCCTCCGTGGGGCCCGGGTCCCTTGGCTGTCAGGGCTGAGCCCCT CAGTGGGCCATCTCCCGAGATGCAGAAGGGTCTGCCTGTGTTTGGCCCCGGGCCCAGGCT GGGGGGACGCAGAGGCACAGGCGGCGGGGGCTCCCTGAACACGGCACCCCCCGCCTCTCC CCCGTTGAGCCCAGGGAGCAGCGGGGGGTGGGTCTGGTGAAGGGGGCACCCAGTTTAGCA TCAGCAGCTCACAGACCCATCAGCATAAACCGTCAGGAGCGGTCAGGCCGTGGAATGTTG TAAAAACCAGACATTAAATTGCTT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 473-623, - strand, RNAz p=0.650475 | |
| 750-850, + strand, RNAz p=0.91943 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 473-623, - strand, RNAz p=0.650475 | |
| 750-850, + strand, RNAz p=0.91943 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AJ417076, + |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 77-195, gnl|bosTau2|chr1 (93733307-93733425) | |
| 77-195, gnl|canFam2|chrUn (49325156-49325252) | |
| 77-195, gnl|dasNov1|scaffold_6736 (86443-86516) | |
| 77-195, gnl|echTel1|scaffold_293697 (219-145) | |
| 77-195, gnl|hg17|chr21 (44685083-44685180) | |
| 77-195, gnl|Hg17|chr21 (44685098-44685216) | |
| 77-195, gnl|loxAfr1|scaffold_127498 (383-479) | |
| 77-195, gnl|mm7|chr10 (77566027-77565931) | |
| 77-195, gnl|Mm7|chr10 (77566011-77565893) | |
| 77-195, gnl|oryCun1|scaffold_86924 (295-392) | |
| 77-195, gnl|panTro1|chr22 (44858695-44858792) | |
| 77-195, gnl|rheMac2|chr3 (2275894-2275801) | |
| 77-195, gnl|rn3|chr20 (11098660-11098756) | |
| 77-195, gnl|tetNig1|chr2 (12691441-12691347) | |
| 77-195, gnl|xenTro1|scaffold_1925 (46106-46178) | |
| 196-383, gnl|bosTau2|chr1 (93734073-93734265) | |
| 196-383, gnl|canFam2|chrUn (49325756-49325953) | |
| 196-383, gnl|dasNov1|scaffold_134962 (136-306) | |
| 196-383, gnl|echTel1|scaffold_291575 (136283-136461) | |
| 196-383, gnl|hg17|chr21 (44685950-44686142) | |
| 196-383, gnl|Hg17|chr21 (44686003-44686279) | |
| 196-383, gnl|loxAfr1|scaffold_127498 (1105-1297) | |
| 196-383, gnl|mm7|chr10 (77564959-77564768) | |
| 196-383, gnl|oryCun1|scaffold_86924 (674-859) | |
| 196-383, gnl|panTro1|chr22 (44859562-44859754) | |
| 196-383, gnl|rheMac2|chr3 (2275145-2274953) | |
| 196-383, gnl|rn3|chr20 (11099790-11099981) | |
| 473-1036, gnl|bosTau2|chr1 (93734271-93734854) | |
| 473-1036, gnl|Hg17|chr21 (44686284-44686899) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 77-195, gnl|bosTau2|chr1 (93733307-93733425) | |
| 77-195, gnl|canFam2|chrUn (49325156-49325252) | |
| 77-195, gnl|dasNov1|scaffold_6736 (86443-86516) | |
| 77-195, gnl|echTel1|scaffold_293697 (219-145) | |
| 77-195, gnl|hg17|chr21 (44685083-44685180) | |
| 77-195, gnl|Hg17|chr21 (44685098-44685216) | |
| 77-195, gnl|loxAfr1|scaffold_127498 (383-479) | |
| 77-195, gnl|mm7|chr10 (77566027-77565931) | |
| 77-195, gnl|Mm7|chr10 (77566011-77565893) | |
| 77-195, gnl|oryCun1|scaffold_86924 (295-392) | |
| 77-195, gnl|panTro1|chr22 (44858695-44858792) | |
| 77-195, gnl|rheMac2|chr3 (2275894-2275801) | |
| 77-195, gnl|rn3|chr20 (11098660-11098756) | |
| 77-195, gnl|tetNig1|chr2 (12691441-12691347) | |
| 77-195, gnl|xenTro1|scaffold_1925 (46106-46178) | |
| 196-383, gnl|bosTau2|chr1 (93734073-93734265) | |
| 196-383, gnl|canFam2|chrUn (49325756-49325953) | |
| 196-383, gnl|dasNov1|scaffold_134962 (136-306) | |
| 196-383, gnl|echTel1|scaffold_291575 (136283-136461) | |
| 196-383, gnl|hg17|chr21 (44685950-44686142) | |
| 196-383, gnl|Hg17|chr21 (44686003-44686279) | |
| 196-383, gnl|loxAfr1|scaffold_127498 (1105-1297) | |
| 196-383, gnl|mm7|chr10 (77564959-77564768) | |
| 196-383, gnl|oryCun1|scaffold_86924 (674-859) | |
| 196-383, gnl|panTro1|chr22 (44859562-44859754) | |
| 196-383, gnl|rheMac2|chr3 (2275145-2274953) | |
| 196-383, gnl|rn3|chr20 (11099790-11099981) | |
| 473-1036, gnl|bosTau2|chr1 (93734271-93734854) | |
| 473-1036, gnl|Hg17|chr21 (44686284-44686899) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) |