Non-Coding RNA Search

Ss1.1-Pig3-SRG8024P06.5

Sequence:


               
               GGCCATCAGCCTGATTTATCATCCAACGAAGCCCAACTTCTGAGGAAAATTCATTTGCTG
TGCCTCATGGAGATGACTTTCACACGACCTGCCAATCATAGACAACTCACTTTTGAAGAA
ATTGCCAAAAGTGCCAAAATCACCGTGAATGAGGTGGAGTTGCTGGTGATGAAAGCCCTC
TGAGGGGGACTGGTGAAAGGCAGTATTGATGAAGTGGATAAGCGGGTTCACATGACCTGG
GTGCAGCCCCGCGTGTTGGATTTGCAACAGATCATGGGCATGAATGACATAATTGAGCTT
TGTGGGTGTTTTTGGATTGGATCTGTGCTATCTTAGTTTCATTTGGGTGGAAGCCATTTA
GGAAGAAGGCATTGTTGGACGAGATTTCAGAGAATGAATTACCGCTGTACGAACCTGGCG
GCTGAGAAGATCTGCATTTAATTGGGGTGGGGGCTGGGATTCATTTTGGACTATGGACTG
TTCTCTCTGTGGAAACAGGCCTGTCACTGACAGGGGCGCCCATCCACAGGCAGAAGCCTC
CTTGATGGATGTCACTTGGATCCTGCAGTGGCGATGCGTCACTCATGCTCCATTGATGTG
GCATGCATGGTGCGTGGGTGCCCCTCCACTCCATGGTTGCTCTCTGTTGCATCCACCCTT
GTGAACATCTTTTCCAGTGTGGTTTGACGGTGTTTCTGTAATAAATGCCTTGCTCTGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCATCAGCCTGATTTATCATCCAACGAAGCCCAACTTCTGAGGAAAATTCATTTGCTG
TGCCTCATGGAGATGACTTTCACACGACCTGCCAATCATAGACAACTCACTTTTGAAGAA
ATTGCCAAAAGTGCCAAAATCACCGTGAATGAGGTGGAGTTGCTGGTGATGAAAGCCCTC
TGAGGGGGACTGGTGAAAGGCAGTATTGATGAAGTGGATAAGCGGGTTCACATGACCTGG
GTGCAGCCCCGCGTGTTGGATTTGCAACAGATCATGGGCATGAATGACATAATTGAGCTT
TGTGGGTGTTTTTGGATTGGATCTGTGCTATCTTAGTTTCATTTGGGTGGAAGCCATTTA
GGAAGAAGGCATTGTTGGACGAGATTTCAGAGAATGAATTACCGCTGTACGAACCTGGCG
GCTGAGAAGATCTGCATTTAATTGGGGTGGGGGCTGGGATTCATTTTGGACTATGGACTG
TTCTCTCTGTGGAAACAGGCCTGTCACTGACAGGGGCGCCCATCCACAGGCAGAAGCCTC
CTTGATGGATGTCACTTGGATCCTGCAGTGGCGATGCGTCACTCATGCTCCATTGATGTG
GCATGCATGGTGCGTGGGTGCCCCTCCACTCCATGGTTGCTCTCTGTTGCATCCACCCTT
GTGAACATCTTTTCCAGTGTGGTTTGACGGTGTTTCTGTAATAAATGCCTTGCTCTGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50747600|ref|XP_420922.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50747600|ref|XP_420922.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               152-414, gnl|bosTau2|chr29 (45503438-45503702)
               

               
               152-414, gnl|Hg17|chr11 (241818-242076)
               

               
               152-414, gnl|Mm7|chr7 (137314869-137315105)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-414, gnl|bosTau2|chr29 (45503438-45503702)
               

               
               152-414, gnl|Hg17|chr11 (241818-242076)
               

               
               152-414, gnl|Mm7|chr7 (137314869-137315105)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nms (0.213858)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

	152-414, gnl\|bosTau2\|chr29 (45503438-45503702)
	152-414, gnl\|Hg17\|chr11 (241818-242076)
	152-414, gnl\|Mm7\|chr7 (137314869-137315105)