Non-Coding RNA Search

Ss1.1-Pig3-SRG8024P21.3

Sequence:


               
               TGTGTTCTTATGTGTGTTTCCCAGGGGGCTAAAGCTTTCATGTGATTCTCAGAGGTCTCA
GACCCACATGATGTTAAAACCCACTATTTTAACTAGTGGAACTTTCAGCCCAAAGTTTCT
GCAATGCAGAGTGAAGTGAATACCAGGTAGTCAAAAGATGGATTTTTAGTTATAAAGTGG
TCTTCTCAAGTGTCCATCAAATCGATGGGGAAAGCTGATAGCCACCAAGTGGAAGTTGTC
AGAAATTCTTGGCACACCCTAGGGTATTGTACAGCCTATACCCCCACGTAATTCGGTCCC
CCTCTTCCACACCAAACCAGAGCAGGTGTTGCAGACAGGAGGGGCACTGCCTATGGAAGT
GGACTTTCTAGCTGGAGATGCCTTTTTCAGCAATGTATTACTGACTTCACATCCCTTGCC
TGGCTCTGCCTGAGGCTCAGCAGTGCATGACTTCTTGTACATAACTCACGGCTACCAACC
ACTCCCAACACCTACTCTTACCTGGTAGAAATAGGCAGAGTGTCAGCTCTCAGTGCTAGG
TGCCTCAGACCCAAACCAGTGAATGGTGAGGTTCAAGCAAGGGCTGCCATCATGCAGTCT
TTTTACCCAGCTGGCCACTGGCCCAAGGGGGCTCACCCGCCTAGTCTTCCTTTCATTACC
GCTTAGGCCACTGCTGTTGTATTACATTCCTCCCTTTGCAAAATCCCTAAGGAGCCTGTC
ACCACTCCCCTCCCTACTGTCCGCCCCAAACCAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTTCTTATGTGTGTTTCCCAGGGGGCTAAAGCTTTCATGTGATTCTCAGAGGTCTCA
GACCCACATGATGTTAAAACCCACTATTTTAACTAGTGGAACTTTCAGCCCAAAGTTTCT
GCAATGCAGAGTGAAGTGAATACCAGGTAGTCAAAAGATGGATTTTTAGTTATAAAGTGG
TCTTCTCAAGTGTCCATCAAATCGATGGGGAAAGCTGATAGCCACCAAGTGGAAGTTGTC
AGAAATTCTTGGCACACCCTAGGGTATTGTACAGCCTATACCCCCACGTAATTCGGTCCC
CCTCTTCCACACCAAACCAGAGCAGGTGTTGCAGACAGGAGGGGCACTGCCTATGGAAGT
GGACTTTCTAGCTGGAGATGCCTTTTTCAGCAATGTATTACTGACTTCACATCCCTTGCC
TGGCTCTGCCTGAGGCTCAGCAGTGCATGACTTCTTGTACATAACTCACGGCTACCAACC
ACTCCCAACACCTACTCTTACCTGGTAGAAATAGGCAGAGTGTCAGCTCTCAGTGCTAGG
TGCCTCAGACCCAAACCAGTGAATGGTGAGGTTCAAGCAAGGGCTGCCATCATGCAGTCT
TTTTACCCAGCTGGCCACTGGCCCAAGGGGGCTCACCCGCCTAGTCTTCCTTTCATTACC
GCTTAGGCCACTGCTGTTGTATTACATTCCTCCCTTTGCAAAATCCCTAAGGAGCCTGTC
ACCACTCCCCTCCCTACTGTCCGCCCCAAACCAAGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               194-295, - strand, RNAz p=0.549227
               

               
               578-737, - strand, RNAz p=0.891655

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-295, - strand, RNAz p=0.549227
               

               
               578-737, - strand, RNAz p=0.891655

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               5-756, gnl|bosTau2|chr26 (11716629-11717350)
               

               
               5-756, gnl|canFam2|chr28 (15344312-15345122)
               

               
               5-756, gnl|dasNov1|scaffold_69516 (4249-3450)
               

               
               5-756, gnl|echTel1|scaffold_314950 (96276-97097)
               

               
               5-756, gnl|hg17|chr10 (101142963-101143793)
               

               
               5-756, gnl|Hg17|chr10 (101143182-101143964)
               

               
               5-756, gnl|loxAfr1|scaffold_2071 (53125-52321)
               

               
               5-756, gnl|mm7|chr19 (43390113-43390816)
               

               
               5-756, gnl|Mm7|chr19 (43390265-43390972)
               

               
               5-756, gnl|oryCun1|scaffold_214183 (149808-149040)
               

               
               5-756, gnl|panTro1|chr8 (102888087-102888920)
               

               
               5-756, gnl|rheMac2|chr9 (99004860-99005693)
               

               
               5-756, gnl|rn3|chr1 (247465315-247464629)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-756, gnl|bosTau2|chr26 (11716629-11717350)
               

               
               5-756, gnl|canFam2|chr28 (15344312-15345122)
               

               
               5-756, gnl|dasNov1|scaffold_69516 (4249-3450)
               

               
               5-756, gnl|echTel1|scaffold_314950 (96276-97097)
               

               
               5-756, gnl|hg17|chr10 (101142963-101143793)
               

               
               5-756, gnl|Hg17|chr10 (101143182-101143964)
               

               
               5-756, gnl|loxAfr1|scaffold_2071 (53125-52321)
               

               
               5-756, gnl|mm7|chr19 (43390113-43390816)
               

               
               5-756, gnl|Mm7|chr19 (43390265-43390972)
               

               
               5-756, gnl|oryCun1|scaffold_214183 (149808-149040)
               

               
               5-756, gnl|panTro1|chr8 (102888087-102888920)
               

               
               5-756, gnl|rheMac2|chr9 (99004860-99005693)
               

               
               5-756, gnl|rn3|chr1 (247465315-247464629)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (0.58548)
               

               
               cbr (0.127975)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               cbr (0.127975)

	194-295, - strand, RNAz p=0.549227
	578-737, - strand, RNAz p=0.891655

	5-756, gnl\|bosTau2\|chr26 (11716629-11717350)
	5-756, gnl\|canFam2\|chr28 (15344312-15345122)
	5-756, gnl\|dasNov1\|scaffold_69516 (4249-3450)
	5-756, gnl\|echTel1\|scaffold_314950 (96276-97097)
	5-756, gnl\|hg17\|chr10 (101142963-101143793)
	5-756, gnl\|Hg17\|chr10 (101143182-101143964)
	5-756, gnl\|loxAfr1\|scaffold_2071 (53125-52321)
	5-756, gnl\|mm7\|chr19 (43390113-43390816)
	5-756, gnl\|Mm7\|chr19 (43390265-43390972)
	5-756, gnl\|oryCun1\|scaffold_214183 (149808-149040)
	5-756, gnl\|panTro1\|chr8 (102888087-102888920)
	5-756, gnl\|rheMac2\|chr9 (99004860-99005693)
	5-756, gnl\|rn3\|chr1 (247465315-247464629)