Ss1.1-Pig3-SRG8025B21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCATGGGCTGGACCATGAGGCTGGCTACGGCAGCCCTGTTCCTGGGCCTCACGATGGC GGTCCCCGGAGATGAAGAGGACAGTGACCCATGTGTGTACGAGGCCTTGTCTGACAGCGA CGCTGTGCTCTGCAAGGGCCTCAAAGTGTTCTACCCAGAGTTGGGGAACCTCGGCTGCAT GGTGGTTCCTGAGTGCAACAACTACAGACAGAAGATCACCTCCTGGACTGAGCCAATTGT CAAGTTCCCTGGGGCCTTGGACGGTGCAACCTATATCCTGGTGATGGTGGATCCAGACGC CCCCAGCAGGTCCTCTCCCAAAGCTCAGTTCTGGAGACATTGGCTGGTGACAGATATCAA GGGCACTGACATAAGGAAAGGGAAGATACAGGGCCAGGAGTTATCACCCTACCAGCCTCC CTCCCCACCACCAAAAAGTGGCTTCCATCGCTACCAGTTCTTCGTCTATCTTCAGCAGGA AAAGAGCATCTCTCTCCTTCCCAAAGAAAACAAAACTCGAGGTTCTTGGAAAATGGACAA ATTTCTGAGCCGCTTCCACCTGAGCGAACCTGAAGCCAGCACCCAGTTCATGACCCAGTA TTACCAGGACTCACAAAAGCTCCAGCCAGGGGAAGGAAGTAGTGAGCCCAAGGACAAACC CAAGCGGAGATAACTGCCCGCCAGACCTCAGGCTTCACGTTGCAGGTGTGTCTACAGTGC TCACCGCCCTCGGTCTGGGTATGGAGCCCCCTCTGGGTACAGAACCCCTTCTCTTCTGAA TTTAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCATGGGCTGGACCATGAGGCTGGCTACGGCAGCCCTGTTCCTGGGCCTCACGATGGC GGTCCCCGGAGATGAAGAGGACAGTGACCCATGTGTGTACGAGGCCTTGTCTGACAGCGA CGCTGTGCTCTGCAAGGGCCTCAAAGTGTTCTACCCAGAGTTGGGGAACCTCGGCTGCAT GGTGGTTCCTGAGTGCAACAACTACAGACAGAAGATCACCTCCTGGACTGAGCCAATTGT CAAGTTCCCTGGGGCCTTGGACGGTGCAACCTATATCCTGGTGATGGTGGATCCAGACGC CCCCAGCAGGTCCTCTCCCAAAGCTCAGTTCTGGAGACATTGGCTGGTGACAGATATCAA GGGCACTGACATAAGGAAAGGGAAGATACAGGGCCAGGAGTTATCACCCTACCAGCCTCC CTCCCCACCACCAAAAAGTGGCTTCCATCGCTACCAGTTCTTCGTCTATCTTCAGCAGGA AAAGAGCATCTCTCTCCTTCCCAAAGAAAACAAAACTCGAGGTTCTTGGAAAATGGACAA ATTTCTGAGCCGCTTCCACCTGAGCGAACCTGAAGCCAGCACCCAGTTCATGACCCAGTA TTACCAGGACTCACAAAAGCTCCAGCCAGGGGAAGGAAGTAGTGAGCCCAAGGACAAACC CAAGCGGAGATAACTGCCCGCCAGACCTCAGGCTTCACGTTGCAGGTGTGTCTACAGTGC TCACCGCCCTCGGTCTGGGTATGGAGCCCCCTCTGGGTACAGAACCCCTTCTCTTCTGAA TTTAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-136, gnl|bosTau2|chr8 (30570668-30570803) | |
| 1-136, gnl|canFam2|chr25 (37365528-37364740) | |
| 1-136, gnl|dasNov1|scaffold_113161 (4034-3250) | |
| 1-136, gnl|hg17|chr8 (22840339-22841203) | |
| 1-136, gnl|Hg17|chr8 (22841176-22841041) | |
| 1-136, gnl|mm7|chr14 (64492753-64491931) | |
| 1-136, gnl|oryCun1|scaffold_118031 (5957-5247) | |
| 1-136, gnl|panTro1|chr7 (23779268-23780132) | |
| 1-136, gnl|rheMac2|chr8 (22877882-22878750) | |
| 1-136, gnl|rn3|chr15 (50241854-50241137) | |
| 265-376, gnl|bosTau2|chr8 (30716435-30716549) | |
| 265-376, gnl|canFam2|chr25 (37468346-37468139) | |
| 265-376, gnl|galGal2|chrUn (99997782-99997568) | |
| 265-376, gnl|hg17|chr8 (22731028-22731235) | |
| 265-376, gnl|Hg17|chr8 (22731191-22731078) | |
| 265-376, gnl|loxAfr1|scaffold_132059 (5553-5347) | |
| 265-376, gnl|mm7|chr14 (64608106-64607884) | |
| 265-376, gnl|Mm7|chr14 (64607926-64608039) | |
| 265-376, gnl|monDom2|scaffold_1 (72563488-72563294) | |
| 265-376, gnl|oryCun1|scaffold_95043 (8037-7876) | |
| 265-376, gnl|panTro1|chr7 (23669701-23669908) | |
| 265-376, gnl|rheMac2|chr8 (22768034-22768241) | |
| 265-376, gnl|rn3|chr15 (50382243-50382021) | |
| 517-792, gnl|bosTau2|chr8 (30830160-30830443) | |
| 517-792, gnl|canFam2|chr25 (37564232-37563895) | |
| 517-792, gnl|dasNov1|scaffold_22659 (3455-3133) | |
| 517-792, gnl|echTel1|scaffold_313694 (9923-10254) | |
| 517-792, gnl|hg17|chr8 (22626692-22627020) | |
| 517-792, gnl|Hg17|chr8 (22626999-22626721) | |
| 517-792, gnl|loxAfr1|scaffold_15149 (8645-8959) | |
| 517-792, gnl|mm7|chr14 (64704431-64704058) | |
| 517-792, gnl|Mm7|chr14 (64704076-64704340) | |
| 517-792, gnl|monDom2|scaffold_1 (72705619-72705267) | |
| 517-792, gnl|panTro1|chr7 (23564140-23564467) | |
| 517-792, gnl|rheMac2|chr8 (22664535-22664862) | |
| 517-792, gnl|rn3|chr15 (50476498-50476119) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-136, gnl|bosTau2|chr8 (30570668-30570803) | |
| 1-136, gnl|canFam2|chr25 (37365528-37364740) | |
| 1-136, gnl|dasNov1|scaffold_113161 (4034-3250) | |
| 1-136, gnl|hg17|chr8 (22840339-22841203) | |
| 1-136, gnl|Hg17|chr8 (22841176-22841041) | |
| 1-136, gnl|mm7|chr14 (64492753-64491931) | |
| 1-136, gnl|oryCun1|scaffold_118031 (5957-5247) | |
| 1-136, gnl|panTro1|chr7 (23779268-23780132) | |
| 1-136, gnl|rheMac2|chr8 (22877882-22878750) | |
| 1-136, gnl|rn3|chr15 (50241854-50241137) | |
| 265-376, gnl|bosTau2|chr8 (30716435-30716549) | |
| 265-376, gnl|canFam2|chr25 (37468346-37468139) | |
| 265-376, gnl|galGal2|chrUn (99997782-99997568) | |
| 265-376, gnl|hg17|chr8 (22731028-22731235) | |
| 265-376, gnl|Hg17|chr8 (22731191-22731078) | |
| 265-376, gnl|loxAfr1|scaffold_132059 (5553-5347) | |
| 265-376, gnl|mm7|chr14 (64608106-64607884) | |
| 265-376, gnl|Mm7|chr14 (64607926-64608039) | |
| 265-376, gnl|monDom2|scaffold_1 (72563488-72563294) | |
| 265-376, gnl|oryCun1|scaffold_95043 (8037-7876) | |
| 265-376, gnl|panTro1|chr7 (23669701-23669908) | |
| 265-376, gnl|rheMac2|chr8 (22768034-22768241) | |
| 265-376, gnl|rn3|chr15 (50382243-50382021) | |
| 517-792, gnl|bosTau2|chr8 (30830160-30830443) | |
| 517-792, gnl|canFam2|chr25 (37564232-37563895) | |
| 517-792, gnl|dasNov1|scaffold_22659 (3455-3133) | |
| 517-792, gnl|echTel1|scaffold_313694 (9923-10254) | |
| 517-792, gnl|hg17|chr8 (22626692-22627020) | |
| 517-792, gnl|Hg17|chr8 (22626999-22626721) | |
| 517-792, gnl|loxAfr1|scaffold_15149 (8645-8959) | |
| 517-792, gnl|mm7|chr14 (64704431-64704058) | |
| 517-792, gnl|Mm7|chr14 (64704076-64704340) | |
| 517-792, gnl|monDom2|scaffold_1 (72705619-72705267) | |
| 517-792, gnl|panTro1|chr7 (23564140-23564467) | |
| 517-792, gnl|rheMac2|chr8 (22664535-22664862) | |
| 517-792, gnl|rn3|chr15 (50476498-50476119) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nms (0.427716) | |
| tes (0.415628) | |
| ldo (0.194005) | |
| ssp (0.13552) | |
| ste (0.135208) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.427716) | |
| tes (0.415628) | |
| ldo (0.194005) | |
| ssp (0.13552) | |
| ste (0.135208) |