Non-Coding RNA Search

Ss1.1-Pig3-SRG8025C17.3

Sequence:


               
               TGCCATCTTCGGACCCCCTAACACCCTCTACGAAGGCGGCTACTTCAAGGCTCATATTAA
ATTTCCTATTGACTACCCATATTCACCACCTACCTTCAGATTCTTGACCAAAATGTGGCA
CCCCAACATTTATGAGAATGGAGATGTATGCATTTCAATTCTTCATCCGCCGGTAGATGA
CCCACAGAGTGGAGAACTGCCCTCTGAAAGGTGGAATCCTACTCAAAATGTCAGGACTAT
CCTGTTAAGTGTAATCTCATTGCTTAACGAGCCCAACACCTTCTCCCCAGCCAATGTGGA
TGCTTCGGTTATGTTCAGGAAATGGAGGGACAGTAAAGGAAAAGACAAAGAATATGCTGA
AATCATTAGGAAACAGGTTTCAGCCACTAAAGCCGAAGCAGAAAAGGATGGAGTGAAGGT
CCCCACAACCCTGGCAGAATATTGCATCAAAACTAAAGTGCCTTCCAATGACAACAGCTC
AGATTTGCTTTATGACGACTTGTATGACGACGACATTGATGATGAAGATGAGGAGGAGGA
AGATGCCGACTGTTATGATGATGATGATTCTGGGAATGAGGAGTCGTGACGCGCTCCTTC
AGTGCCCCTGCACTGCCCTGCCGTCTCAGGCCAAAGGGAGGGGAGCAAGTGGGGACCTAG
CAGTGGCCCCTCAGCAAAAGCTAGCACGGGGGTGGGGAAATAAACACGGCTCCTGCTGAC
TCCCCTTAAGGATCTCAGTTTGCTCCTTTTTATGGACCTCTTAATGGAGAGAAAGTAATC
CTCCAGAGAATGTCTGAATTCTTGCATTCTTTACCCTTCAATCTCTTTATTGATTTTTTT
TTTTTTTTCTTTTTCTTTGATCCCAAACTCCTGCCTCACTTCGTCTCTACAAAGCGTTCA
CAGCAAAACACGTTTGGTCTGTTTTTAGATTCTTGAAGAATTAAATAGTCAAGATGTTTC
ATAAAGACATTTAAGTGTTTAATGCTGGGAACCCATTGGGAGTTCACAAGTGCTGCATAT
GCTGGGTAGCAAAAAGGAAAAAAAAAAAGCATAAGAAGCATAATACCCCCCCAAAACAAA
CTTACTTTTTTTTTTTTAAAGCAAAATTTGCCAAGGTTTAGCTGCTCATTTACCTTAGTG
TGTGTGCATTTGTTCAGCCCCATGGTGGTGAATTTTGTTTCTTTCCCTTCTTAAGGCTGG
GGCACAGTGGGCATCAGGGACTTTGTGCTGAACCTGATAAAGTGTGTTCCTAAGGGCATA
GCCCCTTCAGCCTCCAAGAAAACCATCCTGACACAGAGGCCTCAGCTACTTTAGGAGAGA
AATCAGATTTTGTTTTTTGAAATTGATTGGGATCTAAAGCCTGAAATAAATATTCATACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCATCTTCGGACCCCCTAACACCCTCTACGAAGGCGGCTACTTCAAGGCTCATATTAA
ATTTCCTATTGACTACCCATATTCACCACCTACCTTCAGATTCTTGACCAAAATGTGGCA
CCCCAACATTTATGAGAATGGAGATGTATGCATTTCAATTCTTCATCCGCCGGTAGATGA
CCCACAGAGTGGAGAACTGCCCTCTGAAAGGTGGAATCCTACTCAAAATGTCAGGACTAT
CCTGTTAAGTGTAATCTCATTGCTTAACGAGCCCAACACCTTCTCCCCAGCCAATGTGGA
TGCTTCGGTTATGTTCAGGAAATGGAGGGACAGTAAAGGAAAAGACAAAGAATATGCTGA
AATCATTAGGAAACAGGTTTCAGCCACTAAAGCCGAAGCAGAAAAGGATGGAGTGAAGGT
CCCCACAACCCTGGCAGAATATTGCATCAAAACTAAAGTGCCTTCCAATGACAACAGCTC
AGATTTGCTTTATGACGACTTGTATGACGACGACATTGATGATGAAGATGAGGAGGAGGA
AGATGCCGACTGTTATGATGATGATGATTCTGGGAATGAGGAGTCGTGACGCGCTCCTTC
AGTGCCCCTGCACTGCCCTGCCGTCTCAGGCCAAAGGGAGGGGAGCAAGTGGGGACCTAG
CAGTGGCCCCTCAGCAAAAGCTAGCACGGGGGTGGGGAAATAAACACGGCTCCTGCTGAC
TCCCCTTAAGGATCTCAGTTTGCTCCTTTTTATGGACCTCTTAATGGAGAGAAAGTAATC
CTCCAGAGAATGTCTGAATTCTTGCATTCTTTACCCTTCAATCTCTTTATTGATTTTTTT
TTTTTTTTCTTTTTCTTTGATCCCAAACTCCTGCCTCACTTCGTCTCTACAAAGCGTTCA
CAGCAAAACACGTTTGGTCTGTTTTTAGATTCTTGAAGAATTAAATAGTCAAGATGTTTC
ATAAAGACATTTAAGTGTTTAATGCTGGGAACCCATTGGGAGTTCACAAGTGCTGCATAT
GCTGGGTAGCAAAAAGGAAAAAAAAAAAGCATAAGAAGCATAATACCCCCCCAAAACAAA
CTTACTTTTTTTTTTTTAAAGCAAAATTTGCCAAGGTTTAGCTGCTCATTTACCTTAGTG
TGTGTGCATTTGTTCAGCCCCATGGTGGTGAATTTTGTTTCTTTCCCTTCTTAAGGCTGG
GGCACAGTGGGCATCAGGGACTTTGTGCTGAACCTGATAAAGTGTGTTCCTAAGGGCATA
GCCCCTTCAGCCTCCAAGAAAACCATCCTGACACAGAGGCCTCAGCTACTTTAGGAGAGA
AATCAGATTTTGTTTTTTGAAATTGATTGGGATCTAAAGCCTGAAATAAATATTCATACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13385778|ref|NP_080551.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13385778|ref|NP_080551.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               121-239, - strand, RNAz p=0.512019
               

               
               719-950, - strand, RNAz p=0.999051

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-239, - strand, RNAz p=0.512019
               

               
               719-950, - strand, RNAz p=0.999051

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-950, gnl|bosTau2|chr27 (12985662-12984757)
               


               
               1134-1380, gnl|bosTau2|chr8 (5473512-5473291)
               

               
               1134-1380, gnl|Hg17|chr9 (33907742-33907978)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-950, gnl|bosTau2|chr27 (12985662-12984757)
               


               
               1134-1380, gnl|bosTau2|chr8 (5473512-5473291)
               

               
               1134-1380, gnl|Hg17|chr9 (33907742-33907978)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               cag (0.302389)
               

               
               ste (0.270416)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               ste (0.270416)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

	121-239, - strand, RNAz p=0.512019
	719-950, - strand, RNAz p=0.999051

	1-950, gnl\|bosTau2\|chr27 (12985662-12984757)

	1134-1380, gnl\|bosTau2\|chr8 (5473512-5473291)
	1134-1380, gnl\|Hg17\|chr9 (33907742-33907978)

	cag (0.302389)
	ste (0.270416)
	cly (0.241284)
	eru (0.240096)
	tes (0.207814)
	hea (0.204499)
	eje (0.197668)
	sin (0.174948)
	cki (0.165235)
	csp (0.161186)
	mga (0.160205)
	csk (0.140746)
	hlv (0.139256)
	che (0.136314)
	ssp (0.13552)
	thg (0.126791)
	ese (0.126502)
	cty (0.10408)