Non-Coding RNA Search

Ss1.1-Pig3-SRG8025C21.5

Sequence:


               
               GGCGGCTCTGTGACGGGTGCGGGATGCGCTCCGAAAAGGAGGGCGGCGAAGGCCCCAGGG
TGGCCGTTGTTGCGCGGGGCCCGAGCGGGAGGGAGAAGGCTTTGCCTGCGGAAATCCAAA
TCTGCCAGGAATCTCTGCGGCGAGAGCTCGAGACGCCACTGGCCCCGTCCTCCGGTAGTG
GGGGAAACGGAGGCAAACCTCGCGGCAGGAGGCGGAAGGTGTCCACGCAGGTGGTTGTCC
GGCGGCTCCCTCCCAGCCTCACCAGGGAGCAGTTGGAAGAGCAGCTCCAGCCCCTGCCCG
CACACGATTACTTTGAGTTCTTTACTGCTGATCTCAGTCTTTATCCTCATCTCTACTCAA
GAGCATACATTAATTTCAGAAATCCTGATGACATCCTTCTTTTTAGAGATCGTTTTGATG
GATATATCTTCATTGACAGTAAAGGCCTAGAATATCCTGCAGTGGTAGAATTTGCTCCAT
TCCAGAAGATAGCCAAAAAGAAGCTAAAGAAAAAAGATACCAAAACTGGAAGCATTGAAG
ATGATCCAGAATATAAGAAGTTTTTAGAGACTTACTGTGTGGAGGAGGAGAAAGCTAGTG
CCAATCCTGAAACTCTTTTGGGAGATGTAGAGGCAAAGACAAGAGAACTTATTGCCAGAA
GAACCACACCTCTTTTGGAATATATTAAAAATAGAAAGTTAGAAAAGCAGAGAATTCGAG
AAGAAAAGCGAGAAGAACGGAGGAGGAGGGAGTTGGAAAAGAAACGCTTACGGGAAGAAG
AGAAAAGACGACGCCGGGAAGAGGAGAGATGTAAGAAGAAAGCTTCAGAAAAGCAAAAGA
AAACTGCTGAGAAAGAAGTAAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCTCTGTGACGGGTGCGGGATGCGCTCCGAAAAGGAGGGCGGCGAAGGCCCCAGGG
TGGCCGTTGTTGCGCGGGGCCCGAGCGGGAGGGAGAAGGCTTTGCCTGCGGAAATCCAAA
TCTGCCAGGAATCTCTGCGGCGAGAGCTCGAGACGCCACTGGCCCCGTCCTCCGGTAGTG
GGGGAAACGGAGGCAAACCTCGCGGCAGGAGGCGGAAGGTGTCCACGCAGGTGGTTGTCC
GGCGGCTCCCTCCCAGCCTCACCAGGGAGCAGTTGGAAGAGCAGCTCCAGCCCCTGCCCG
CACACGATTACTTTGAGTTCTTTACTGCTGATCTCAGTCTTTATCCTCATCTCTACTCAA
GAGCATACATTAATTTCAGAAATCCTGATGACATCCTTCTTTTTAGAGATCGTTTTGATG
GATATATCTTCATTGACAGTAAAGGCCTAGAATATCCTGCAGTGGTAGAATTTGCTCCAT
TCCAGAAGATAGCCAAAAAGAAGCTAAAGAAAAAAGATACCAAAACTGGAAGCATTGAAG
ATGATCCAGAATATAAGAAGTTTTTAGAGACTTACTGTGTGGAGGAGGAGAAAGCTAGTG
CCAATCCTGAAACTCTTTTGGGAGATGTAGAGGCAAAGACAAGAGAACTTATTGCCAGAA
GAACCACACCTCTTTTGGAATATATTAAAAATAGAAAGTTAGAAAAGCAGAGAATTCGAG
AAGAAAAGCGAGAAGAACGGAGGAGGAGGGAGTTGGAAAAGAAACGCTTACGGGAAGAAG
AGAAAAGACGACGCCGGGAAGAGGAGAGATGTAAGAAGAAAGCTTCAGAAAAGCAAAAGA
AAACTGCTGAGAAAGAAGTAAGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47169314|pdb|1UW4|C

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47169314|pdb|1UW4|C

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               15-204, gnl|bosTau2|chr12 (47819443-47819258)
               

               
               15-204, gnl|Hg17|chr13 (114065208-114065397)
               

               
               15-204, gnl|Mm7|chr8 (13759894-13760078)
               


               
               229-788, gnl|bosTau2|chr12 (36233323-36232753)
               

               
               229-788, gnl|Hg17|chrX (118768619-118756991)
               

               
               229-788, gnl|Mm7|chrX (31869840-31859340)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-204, gnl|bosTau2|chr12 (47819443-47819258)
               

               
               15-204, gnl|Hg17|chr13 (114065208-114065397)
               

               
               15-204, gnl|Mm7|chr8 (13759894-13760078)
               


               
               229-788, gnl|bosTau2|chr12 (36233323-36232753)
               

               
               229-788, gnl|Hg17|chrX (118768619-118756991)
               

               
               229-788, gnl|Mm7|chrX (31869840-31859340)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	15-204, gnl\|bosTau2\|chr12 (47819443-47819258)
	15-204, gnl\|Hg17\|chr13 (114065208-114065397)
	15-204, gnl\|Mm7\|chr8 (13759894-13760078)

	229-788, gnl\|bosTau2\|chr12 (36233323-36232753)
	229-788, gnl\|Hg17\|chrX (118768619-118756991)
	229-788, gnl\|Mm7\|chrX (31869840-31859340)