Non-Coding RNA Search

Ss1.1-Pig3-SRG8025D14.3

Sequence:


               
               TTTGAATTATTTATGCAAAATAGCTGTGGATTTATGTTGTATGAGGCTAAAAGTTGACAG
AATTTCAGTTGCCATTTGTGGATTTTGATTTAGATTCATTAGGTATATCAGAATCTTATT
TTTCATAAGAGCATGGAAAACACTTGTCATCTGCTCTTTAACAAAAAATATTTAGTTTTT
GAAAACATAGAGTTTGACTGACGGTGAATGGTGTGAACCAGATCATATTTGTATTGAATG
AAAAATAGAACTTTTCGAAACTTAGGTTGTAGAAATAATGACAGGAGTTCCCTGTTGGCT
CAGCAGGTTAAGTATTAGGCATTGCCACTGTTGTGGCTTGGGTCACTGCTGTGCCAAGGG
TTTGATCCCTGGCCTGGGAATGTTTGTGTACTGTGGGTGCTGCCCCCAAAAAAAGTAATG
ACAGTGCTTAGCTTAGTATTATTTATCATTTGAGTCATTTAAATTCAGTGAGAATTTTGA
TTGAGAATGTTTTTACAAGTTTTACATCTGTAGATCACAATCTTAAAAAAGCGTAATGAA
ACATTTCCAGCATGAAAAGTTCTTTTTACTTTGTTGCATAAAAATAATGAGTGCTTACCT
AATATACCTTGAGTGGTTATCTAGTAAATCACTAAATGGGCAGTGTCTTTCAACGAATAT
GTTATTATTTTCTGAAGAAATAAATATTTCCAGTCATTAAACAAAAACTAAATCAAATGT
TTTATATCAGGAATTCTAAATATGCCTTTCTTAAGATCATTTTTTGTATCATTATTTTTA
CCCTGAAAGTTTAAACTAATCAGAGTGATGGGTGGTTCAAAATAAATTTCAGAAAACTTA
GGATAGCACTGATTCTCTTTCTGCAACAGAATATCAGTGGAAAATTTTTCCAAGACTAAT
ACAAGTTTAGTCTGATTTTGAAGACTTCATTAGTTTCCAATTAAATGATGGTACAAGCAT
ATATTCTTTGGTGGCATTTTTTTCTTCTTCAAACAAAAGTGAACTGATTTTAATAAAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAATTATTTATGCAAAATAGCTGTGGATTTATGTTGTATGAGGCTAAAAGTTGACAG
AATTTCAGTTGCCATTTGTGGATTTTGATTTAGATTCATTAGGTATATCAGAATCTTATT
TTTCATAAGAGCATGGAAAACACTTGTCATCTGCTCTTTAACAAAAAATATTTAGTTTTT
GAAAACATAGAGTTTGACTGACGGTGAATGGTGTGAACCAGATCATATTTGTATTGAATG
AAAAATAGAACTTTTCGAAACTTAGGTTGTAGAAATAATGACAGGAGTTCCCTGTTGGCT
CAGCAGGTTAAGTATTAGGCATTGCCACTGTTGTGGCTTGGGTCACTGCTGTGCCAAGGG
TTTGATCCCTGGCCTGGGAATGTTTGTGTACTGTGGGTGCTGCCCCCAAAAAAAGTAATG
ACAGTGCTTAGCTTAGTATTATTTATCATTTGAGTCATTTAAATTCAGTGAGAATTTTGA
TTGAGAATGTTTTTACAAGTTTTACATCTGTAGATCACAATCTTAAAAAAGCGTAATGAA
ACATTTCCAGCATGAAAAGTTCTTTTTACTTTGTTGCATAAAAATAATGAGTGCTTACCT
AATATACCTTGAGTGGTTATCTAGTAAATCACTAAATGGGCAGTGTCTTTCAACGAATAT
GTTATTATTTTCTGAAGAAATAAATATTTCCAGTCATTAAACAAAAACTAAATCAAATGT
TTTATATCAGGAATTCTAAATATGCCTTTCTTAAGATCATTTTTTGTATCATTATTTTTA
CCCTGAAAGTTTAAACTAATCAGAGTGATGGGTGGTTCAAAATAAATTTCAGAAAACTTA
GGATAGCACTGATTCTCTTTCTGCAACAGAATATCAGTGGAAAATTTTTCCAAGACTAAT
ACAAGTTTAGTCTGATTTTGAAGACTTCATTAGTTTCCAATTAAATGATGGTACAAGCAT
ATATTCTTTGGTGGCATTTTTTTCTTCTTCAAACAAAAGTGAACTGATTTTAATAAAGGT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-284, gnl|bosTau2|chr12 (21812627-21812913)
               

               
               1-284, gnl|Hg17|chr13 (72182047-72181762)
               

               
               1-284, gnl|Mm7|chr14 (93436231-93435973)
               


               
               534-1020, gnl|bosTau2|chr12 (21812996-21813481)
               

               
               534-1020, gnl|Hg17|chr13 (72181669-72181011)
               

               
               534-1020, gnl|Mm7|chr14 (93435886-93435262)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-284, gnl|bosTau2|chr12 (21812627-21812913)
               

               
               1-284, gnl|Hg17|chr13 (72182047-72181762)
               

               
               1-284, gnl|Mm7|chr14 (93436231-93435973)
               


               
               534-1020, gnl|bosTau2|chr12 (21812996-21813481)
               

               
               534-1020, gnl|Hg17|chr13 (72181669-72181011)
               

               
               534-1020, gnl|Mm7|chr14 (93435886-93435262)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               isp (0.300752)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               nca (0.136874)
               

               
               sug (0.127291)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.300752)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               nca (0.136874)
               

               
               sug (0.127291)

	1-284, gnl\|bosTau2\|chr12 (21812627-21812913)
	1-284, gnl\|Hg17\|chr13 (72182047-72181762)
	1-284, gnl\|Mm7\|chr14 (93436231-93435973)

	534-1020, gnl\|bosTau2\|chr12 (21812996-21813481)
	534-1020, gnl\|Hg17\|chr13 (72181669-72181011)
	534-1020, gnl\|Mm7\|chr14 (93435886-93435262)

	isp (0.300752)
	ece (0.229305)
	aor (0.195274)
	sag (0.182715)
	sto (0.179824)
	fhi (0.169578)
	tbr (0.154178)
	bfe (0.149858)
	nca (0.136874)
	sug (0.127291)