Non-Coding RNA Search

Ss1.1-Pig3-SRG8025E01.3

Sequence:


               
               GCAACATATATGCTTTAATATTTTAATGTTTGTGCATTAATATTTTCAATTTGTTTAACC
ACTTTGCTGCTAAGATTTTTTTCCGTCCCATCCCCATTTTTTCCAGTACAATTTTAAACA
AGTTTCTTCATTAAAAACTGGTGATGAAATGGTTTTTATTTTACCTTGGATCTTTATAGT
TTAACACACAGTTTCCGATCAGTCTAGAAGACTAATTTATAATGTTACCTGAACTCCTGT
GTGGAATTTTTCTCTTGAGTAAACTAGAATCCTTATGTGGAAACAAATGGATAGTTTCAG
TTTCTCATTCTTAAACATGTGTATAGGTATGTTCAGGAACATCTCATTCTGCATAAAGAT
TTGGCATTGCCACTTGGCTTGTCCTCTGAAACCGTTCTCTTTGTTTTTAATCTGCTAGTA
TAAGCGAATGGCTAAAGAAAACTGCTTAAGTAGTAGTAAATATTGAAAGTGAAATCATCT
AGATAGCATGACAAGAAAGACTTTGGTCTGGTCTGATGGCTAATTTTGTTCAGAATCGAT
CATTCTTAAATGATCTTTCTCCTGTCTTGACAGGGGAATCATTCGATTACTGAAGAAATA
TGAAGTGTGTAACTTCAGCACCACCTACTGGATGATTTATAAGCCAGACATGAGGTGGTG
GTTGGAATCTGACAGTGTTTATCACTACTGCCAGTAAAGGGCTATTTAAGTGGTGGCCAG
CTCCAAATGGAGGAAGCAAGAATAAGAAATATCTCGAACTGTAAAATCAATCTTTTTCAT
AATGTGTCTTGTTGGTTGCTGAAAGATTTTAAGCACTTTTATCCTTACATATCCTGTTTT
AAAATATTTATCGATATTTGGAACTGGCAGTCAAACTTAATGGATGTGCCGAAGCATTTA
TAGAACCAATTAATTTAACTTGAAAAAGCCATTACCAAAATGATATTCTTACTTTTCCTC
CCATTACCAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAACATATATGCTTTAATATTTTAATGTTTGTGCATTAATATTTTCAATTTGTTTAACC
ACTTTGCTGCTAAGATTTTTTTCCGTCCCATCCCCATTTTTTCCAGTACAATTTTAAACA
AGTTTCTTCATTAAAAACTGGTGATGAAATGGTTTTTATTTTACCTTGGATCTTTATAGT
TTAACACACAGTTTCCGATCAGTCTAGAAGACTAATTTATAATGTTACCTGAACTCCTGT
GTGGAATTTTTCTCTTGAGTAAACTAGAATCCTTATGTGGAAACAAATGGATAGTTTCAG
TTTCTCATTCTTAAACATGTGTATAGGTATGTTCAGGAACATCTCATTCTGCATAAAGAT
TTGGCATTGCCACTTGGCTTGTCCTCTGAAACCGTTCTCTTTGTTTTTAATCTGCTAGTA
TAAGCGAATGGCTAAAGAAAACTGCTTAAGTAGTAGTAAATATTGAAAGTGAAATCATCT
AGATAGCATGACAAGAAAGACTTTGGTCTGGTCTGATGGCTAATTTTGTTCAGAATCGAT
CATTCTTAAATGATCTTTCTCCTGTCTTGACAGGGGAATCATTCGATTACTGAAGAAATA
TGAAGTGTGTAACTTCAGCACCACCTACTGGATGATTTATAAGCCAGACATGAGGTGGTG
GTTGGAATCTGACAGTGTTTATCACTACTGCCAGTAAAGGGCTATTTAAGTGGTGGCCAG
CTCCAAATGGAGGAAGCAAGAATAAGAAATATCTCGAACTGTAAAATCAATCTTTTTCAT
AATGTGTCTTGTTGGTTGCTGAAAGATTTTAAGCACTTTTATCCTTACATATCCTGTTTT
AAAATATTTATCGATATTTGGAACTGGCAGTCAAACTTAATGGATGTGCCGAAGCATTTA
TAGAACCAATTAATTTAACTTGAAAAAGCCATTACCAAAATGATATTCTTACTTTTCCTC
CCATTACCAGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               503-699, + strand, RNAz p=0.946831

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               503-699, + strand, RNAz p=0.946831

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-972, gnl|bosTau2|chr10 (22498236-22499181)
               

               
               1-972, gnl|Hg17|chr15 (36433397-36434355)
               

               
               1-972, gnl|Mm7|chr2 (116920984-116921884)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-972, gnl|bosTau2|chr10 (22498236-22499181)
               

               
               1-972, gnl|Hg17|chr15 (36433397-36434355)
               

               
               1-972, gnl|Mm7|chr2 (116920984-116921884)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eye (0.170503)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)

	1-972, gnl\|bosTau2\|chr10 (22498236-22499181)
	1-972, gnl\|Hg17\|chr15 (36433397-36434355)
	1-972, gnl\|Mm7\|chr2 (116920984-116921884)