Non-Coding RNA Search

Ss1.1-Pig3-SRG8025E06.3

Sequence:


               
               CTGGCCTTGGCATTTGAGGCTCTCCCAGGGCTGTGCCTGTGTGTGTACCGTGTGCCCGTC
CGTGCAGCAGACTGCTGGGCAGCTCTGCTCTGCCGAGGGCAGGCCCGGTCCCGGCTGTCT
TTCCCTGCTCCACCCCGGGAGGATTGTTAAGTCACAGTGACCTCGGACAGCGGTTTTATT
ATGACTCTGGGGTCTTTGGGGCAGCATGGGGACCAGATGTGCACGCGCCTTTTCTTCCTG
CTGAGCACAGGCCTGCCTCTGCGGGCACTTGCACCCTGGGGTCCTGCGTCTGCCTCAGAG
CCCCCAGGACCACTCACCAGGCTCAGGGCCAGGAAGCTGGGTCTTGGGAGGTGTGGCCCG
AGCCCCCTGCCCACTCCCGAGCTCTGGCCTGGGCACCGTGGCTCAGAGGAACAGCAGCCG
CGGTGGTCTTGCCACTGGGTGAAGTGCAGCGCTGTCCGGGCAGGGGTCTTCCCTGGCCTC
TCAGCCCTCTTCCCTTTGTGATGGGGAGTCAGCTGAGGGTTTTATCTCCTCTCCCAAGTA
GAGAGAAAGTCGCCCATAGTGGGTGTGTCTGTAAATATTGTGACAGTATTTTTTACTGTG
CTTGTTTTTGGAAAGGGGCTGGGTAAAAAGTAGGGTGTTTTTGTCTTTGTTTTCGGGGCT
GGGGGAGGGTGTTATTTTATCTTTTCTGTGGATCAGAAAAAGCAGAAGCCAAACTTGGGA
TAATTTTTGTGTTAAAGCGGATGGCAATGTCTAACACGCTGTGTATTTATATGTCGTGGC
CCCTGGCCTCTCCCCGCCCACCTCCTGCATAGCCCGACTCCCACCAGCCCAGCTCCGCAC
ACCTGGCCCGTGGGGTGTGTTTTGTCTTCTGTTTTTCTTTCTGCAAAGACACAGCTAGGA
AAGTGAATAAGGGAAAAGTTCTCAGGGAATTCAAGTGTGTTGCTATGGTGACGTCCTTTG
CTGTGAATAAAGATGCTCTTTGGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCCTTGGCATTTGAGGCTCTCCCAGGGCTGTGCCTGTGTGTGTACCGTGTGCCCGTC
CGTGCAGCAGACTGCTGGGCAGCTCTGCTCTGCCGAGGGCAGGCCCGGTCCCGGCTGTCT
TTCCCTGCTCCACCCCGGGAGGATTGTTAAGTCACAGTGACCTCGGACAGCGGTTTTATT
ATGACTCTGGGGTCTTTGGGGCAGCATGGGGACCAGATGTGCACGCGCCTTTTCTTCCTG
CTGAGCACAGGCCTGCCTCTGCGGGCACTTGCACCCTGGGGTCCTGCGTCTGCCTCAGAG
CCCCCAGGACCACTCACCAGGCTCAGGGCCAGGAAGCTGGGTCTTGGGAGGTGTGGCCCG
AGCCCCCTGCCCACTCCCGAGCTCTGGCCTGGGCACCGTGGCTCAGAGGAACAGCAGCCG
CGGTGGTCTTGCCACTGGGTGAAGTGCAGCGCTGTCCGGGCAGGGGTCTTCCCTGGCCTC
TCAGCCCTCTTCCCTTTGTGATGGGGAGTCAGCTGAGGGTTTTATCTCCTCTCCCAAGTA
GAGAGAAAGTCGCCCATAGTGGGTGTGTCTGTAAATATTGTGACAGTATTTTTTACTGTG
CTTGTTTTTGGAAAGGGGCTGGGTAAAAAGTAGGGTGTTTTTGTCTTTGTTTTCGGGGCT
GGGGGAGGGTGTTATTTTATCTTTTCTGTGGATCAGAAAAAGCAGAAGCCAAACTTGGGA
TAATTTTTGTGTTAAAGCGGATGGCAATGTCTAACACGCTGTGTATTTATATGTCGTGGC
CCCTGGCCTCTCCCCGCCCACCTCCTGCATAGCCCGACTCCCACCAGCCCAGCTCCGCAC
ACCTGGCCCGTGGGGTGTGTTTTGTCTTCTGTTTTTCTTTCTGCAAAGACACAGCTAGGA
AAGTGAATAAGGGAAAAGTTCTCAGGGAATTCAAGTGTGTTGCTATGGTGACGTCCTTTG
CTGTGAATAAAGATGCTCTTTGGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               480-655, - strand, RNAz p=0.964506

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               480-655, - strand, RNAz p=0.964506

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-988, gnl|bosTau2|chr25 (39069650-39068650)
               

               
               3-988, gnl|Hg17|chr7 (2340161-2341304)
               

               
               3-988, gnl|Mm7|chr5 (139585505-139586503)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-988, gnl|bosTau2|chr25 (39069650-39068650)
               

               
               3-988, gnl|Hg17|chr7 (2340161-2341304)
               

               
               3-988, gnl|Mm7|chr5 (139585505-139586503)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               fhi (0.508733)
               

               
               amn (0.417711)
               

               
               nbm (0.297974)
               

               
               hyp (0.285673)
               

               
               ecc (0.23007)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               pty (0.142714)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               amn (0.417711)
               

               
               nbm (0.297974)
               

               
               hyp (0.285673)
               

               
               ecc (0.23007)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               pty (0.142714)

	3-988, gnl\|bosTau2\|chr25 (39069650-39068650)
	3-988, gnl\|Hg17\|chr7 (2340161-2341304)
	3-988, gnl\|Mm7\|chr5 (139585505-139586503)

	fhi (0.508733)
	amn (0.417711)
	nbm (0.297974)
	hyp (0.285673)
	ecc (0.23007)
	nep (0.183925)
	fbs (0.175346)
	cut (0.169924)
	nco (0.161734)
	cli (0.152812)
	pty (0.142714)