Non-Coding RNA Search

Ss1.1-Pig3-SRG8025F11.5

Sequence:


               
               TGACCCTGAACCTCTACGACACTGCCGGGCAGGAAGATTATGACCGGCTACGGCCCCTGT
CCTACCAGAACACCCACCTCGTGCTCATCTGCTACGATGTCATGAACCCCACCAGCTATG
ACAACGTTCTCATCAAGTGGTTCCCTGAGGTCACACATTTCTGCCGTGGGACCCCCACGG
TGCTCATCGGCTGCAAGACAGACCTGAGGAAGGACAAGGAACAGCTGCGCAAGCTCCGGG
CAGCCCAGCTGGAGCCCATCACCTACATGCAGGTGGGCCAGGGGCCCCTCCTCTACCCCA
CCCCACTGCCAGGAGCCCAGGTACTTGGGCACAGCTATGGCCAAAAAGCTTCCCAGGCCT
TTGACCTCTGCATCTGGGGTGCCTTAATGGCCCTTGGGGGCCTGAAGCCAACAGGATTCT
AAGAATAATAATTTTTAAATATTAATATTGCTAGCCCACTTGTCTGAGCACTTTATATTA
CTTATTTAATCCTTATAACCTTGAGGCAAGTACTGTTAGCTTTCTCTGTTTTACAGAGAG
ACCAAGACTCANAAAGGTTAAGTAGCTTGCCTAAGGTCACAAAGCTAACCTTAAGTAGAG
CCAGGATCCCATCCCAGTCACTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACCCTGAACCTCTACGACACTGCCGGGCAGGAAGATTATGACCGGCTACGGCCCCTGT
CCTACCAGAACACCCACCTCGTGCTCATCTGCTACGATGTCATGAACCCCACCAGCTATG
ACAACGTTCTCATCAAGTGGTTCCCTGAGGTCACACATTTCTGCCGTGGGACCCCCACGG
TGCTCATCGGCTGCAAGACAGACCTGAGGAAGGACAAGGAACAGCTGCGCAAGCTCCGGG
CAGCCCAGCTGGAGCCCATCACCTACATGCAGGTGGGCCAGGGGCCCCTCCTCTACCCCA
CCCCACTGCCAGGAGCCCAGGTACTTGGGCACAGCTATGGCCAAAAAGCTTCCCAGGCCT
TTGACCTCTGCATCTGGGGTGCCTTAATGGCCCTTGGGGGCCTGAAGCCAACAGGATTCT
AAGAATAATAATTTTTAAATATTAATATTGCTAGCCCACTTGTCTGAGCACTTTATATTA
CTTATTTAATCCTTATAACCTTGAGGCAAGTACTGTTAGCTTTCTCTGTTTTACAGAGAG
ACCAAGACTCANAAAGGTTAAGTAGCTTGCCTAAGGTCACAAAGCTAACCTTAAGTAGAG
CCAGGATCCCATCCCAGTCACTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17390468|gb|AAH18208.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17390468|gb|AAH18208.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               463-574, + strand, RNAz p=0.776691

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               463-574, + strand, RNAz p=0.776691

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               27-137, gnl|bosTau2|chr17 (28326519-28326629)
               

               
               27-137, gnl|canFam2|chr26 (10503464-10503334)
               

               
               27-137, gnl|danRer3|chr10 (36264256-36264129)
               

               
               27-137, gnl|dasNov1|scaffold_187055 (3988-4118)
               

               
               27-137, gnl|echTel1|scaffold_155269 (4595-4725)
               

               
               27-137, gnl|fr1|chrUn (42035573-42035697)
               

               
               27-137, gnl|galGal2|chr15 (5576292-5576421)
               

               
               27-137, gnl|hg17|chr12 (120681705-120681835)
               

               
               27-137, gnl|Hg17|chr12 (120681819-120681709)
               

               
               27-137, gnl|loxAfr1|scaffold_146049 (3454-3336)
               

               
               27-137, gnl|mm7|chr5 (122351042-122351170)
               

               
               27-137, gnl|Mm7|chr5 (122351154-122351044)
               

               
               27-137, gnl|monDom2|scaffold_97 (1940453-1940585)
               

               
               27-137, gnl|oryCun1|scaffold_192722 (67032-66902)
               

               
               27-137, gnl|panTro1|chrUn_random (16933605-16933735)
               

               
               27-137, gnl|rheMac2|chr11 (122866483-122866613)
               

               
               27-137, gnl|tetNig1|chr4 (1607501-1607379)
               


               
               424-624, gnl|bosTau2|chr17 (28327136-28327335)
               

               
               424-624, gnl|Hg17|chr12 (120681380-120681175)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-137, gnl|bosTau2|chr17 (28326519-28326629)
               

               
               27-137, gnl|canFam2|chr26 (10503464-10503334)
               

               
               27-137, gnl|danRer3|chr10 (36264256-36264129)
               

               
               27-137, gnl|dasNov1|scaffold_187055 (3988-4118)
               

               
               27-137, gnl|echTel1|scaffold_155269 (4595-4725)
               

               
               27-137, gnl|fr1|chrUn (42035573-42035697)
               

               
               27-137, gnl|galGal2|chr15 (5576292-5576421)
               

               
               27-137, gnl|hg17|chr12 (120681705-120681835)
               

               
               27-137, gnl|Hg17|chr12 (120681819-120681709)
               

               
               27-137, gnl|loxAfr1|scaffold_146049 (3454-3336)
               

               
               27-137, gnl|mm7|chr5 (122351042-122351170)
               

               
               27-137, gnl|Mm7|chr5 (122351154-122351044)
               

               
               27-137, gnl|monDom2|scaffold_97 (1940453-1940585)
               

               
               27-137, gnl|oryCun1|scaffold_192722 (67032-66902)
               

               
               27-137, gnl|panTro1|chrUn_random (16933605-16933735)
               

               
               27-137, gnl|rheMac2|chr11 (122866483-122866613)
               

               
               27-137, gnl|tetNig1|chr4 (1607501-1607379)
               


               
               424-624, gnl|bosTau2|chr17 (28327136-28327335)
               

               
               424-624, gnl|Hg17|chr12 (120681380-120681175)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	27-137, gnl\|bosTau2\|chr17 (28326519-28326629)
	27-137, gnl\|canFam2\|chr26 (10503464-10503334)
	27-137, gnl\|danRer3\|chr10 (36264256-36264129)
	27-137, gnl\|dasNov1\|scaffold_187055 (3988-4118)
	27-137, gnl\|echTel1\|scaffold_155269 (4595-4725)
	27-137, gnl\|fr1\|chrUn (42035573-42035697)
	27-137, gnl\|galGal2\|chr15 (5576292-5576421)
	27-137, gnl\|hg17\|chr12 (120681705-120681835)
	27-137, gnl\|Hg17\|chr12 (120681819-120681709)
	27-137, gnl\|loxAfr1\|scaffold_146049 (3454-3336)
	27-137, gnl\|mm7\|chr5 (122351042-122351170)
	27-137, gnl\|Mm7\|chr5 (122351154-122351044)
	27-137, gnl\|monDom2\|scaffold_97 (1940453-1940585)
	27-137, gnl\|oryCun1\|scaffold_192722 (67032-66902)
	27-137, gnl\|panTro1\|chrUn_random (16933605-16933735)
	27-137, gnl\|rheMac2\|chr11 (122866483-122866613)
	27-137, gnl\|tetNig1\|chr4 (1607501-1607379)

	424-624, gnl\|bosTau2\|chr17 (28327136-28327335)
	424-624, gnl\|Hg17\|chr12 (120681380-120681175)