Non-Coding RNA Search

Ss1.1-Pig3-SRG8025F22.3

Sequence:


               
               CTGTGGTGGAGGCTGGAGCGAGGCGGCGGGATGCAGCGCCCCGGGCCCTTCAGCACCCTC
TACGGGCGGGTCCTGGCCCCGCTGCCCGGGCGGGCTGGGGGCGCGGCCTCTGGCGGAGGC
GGGAACAGCTGGGGCGTCCTGGGTTCGCACGTGCAGCCTCCGGGACGCGCGCAGTTCGGC
GTTGGCAGCACTAGTACCAGCAGTGGGGACGCTAACAGCGTCTGCCCGGCCCCCTCCACG
ATGTCCAAGGCCGAGGAGGCCAAGAAGCTGGCGGGCCGCGCGGCCGTGGAGAACCACGTG
AGGAATAACCAAGTGCTGGGAATTGGAAGTGGTTCTACAATTGTCCATGCTGTGCAGCGA
ATAGCTGAAAGAGTGAAACAGGAGAATCTGAACCTCATCTGTATCCCCACTTCCTTCCAG
GCCCGTCAGCTCATCCTGCAGCATGGCTTAACTCTCAGTGACCTGGACCGACACCCAGAG
ATTGACCTCGCCATCGATGGTGCTGATGAAGTAGATGCTGACCTCAATCTCATCAAGGGT
GGTGGAGGCTGCCTGACCCAGGAGAAAATTGTAGCTGGCAACGCCAGTCGCTTCATCGTG
ATCGCCGATTTCAGGAAGGATTCAAAGAACCTTGGGGACCAGTGGCACAAGGGAATCCCC
ATCGAGGTCATCCCCATGGCCTACGTCCCAGTGAGCCGCACCGTGACCCAGAAGTTTGGG
GGCGTAATTGAACTTCGAATGGCCGTCAACAAGGCAGGACCTGTGGTGACAGATAATGGA
AATTTTATCCTGGACTGGAAGTTCGACCGGGTCCACAAATGGAGTGAAGTGAACACAGCT
ATCACCATGATCCCAGGCGTGGTGGACACGGGCCTGTTCATCAACATGGCTGAGAGAGTC
TACTTCGGGATGCAGGATGGCTCAGTGAACATGAGGGAGAAGCCTTTCTAAACCGAAGCT
GCAGGAGCAGGGTGTGTCCACCCCACGTCCCCAGCCCACCGCCGAGGCACACCTGCCTCC
CCAGGAGCCTTTGCCTTAACGTCTCTGTGCCAGGTGGACAGCTTGGCAGGGTGGGGGGTT
GGAGGTTAAATCTGGTCTTCTGAAGTATTATTATTAATTATCTTTTTAAAGAGAGAAATA
TAAACATATATATTTTTACTATTAAAAATACTCAGTTTTTTTTAATAAAGTAGAACTTGA
TTTCATGTTTTATATGAGACATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGGTGGAGGCTGGAGCGAGGCGGCGGGATGCAGCGCCCCGGGCCCTTCAGCACCCTC
TACGGGCGGGTCCTGGCCCCGCTGCCCGGGCGGGCTGGGGGCGCGGCCTCTGGCGGAGGC
GGGAACAGCTGGGGCGTCCTGGGTTCGCACGTGCAGCCTCCGGGACGCGCGCAGTTCGGC
GTTGGCAGCACTAGTACCAGCAGTGGGGACGCTAACAGCGTCTGCCCGGCCCCCTCCACG
ATGTCCAAGGCCGAGGAGGCCAAGAAGCTGGCGGGCCGCGCGGCCGTGGAGAACCACGTG
AGGAATAACCAAGTGCTGGGAATTGGAAGTGGTTCTACAATTGTCCATGCTGTGCAGCGA
ATAGCTGAAAGAGTGAAACAGGAGAATCTGAACCTCATCTGTATCCCCACTTCCTTCCAG
GCCCGTCAGCTCATCCTGCAGCATGGCTTAACTCTCAGTGACCTGGACCGACACCCAGAG
ATTGACCTCGCCATCGATGGTGCTGATGAAGTAGATGCTGACCTCAATCTCATCAAGGGT
GGTGGAGGCTGCCTGACCCAGGAGAAAATTGTAGCTGGCAACGCCAGTCGCTTCATCGTG
ATCGCCGATTTCAGGAAGGATTCAAAGAACCTTGGGGACCAGTGGCACAAGGGAATCCCC
ATCGAGGTCATCCCCATGGCCTACGTCCCAGTGAGCCGCACCGTGACCCAGAAGTTTGGG
GGCGTAATTGAACTTCGAATGGCCGTCAACAAGGCAGGACCTGTGGTGACAGATAATGGA
AATTTTATCCTGGACTGGAAGTTCGACCGGGTCCACAAATGGAGTGAAGTGAACACAGCT
ATCACCATGATCCCAGGCGTGGTGGACACGGGCCTGTTCATCAACATGGCTGAGAGAGTC
TACTTCGGGATGCAGGATGGCTCAGTGAACATGAGGGAGAAGCCTTTCTAAACCGAAGCT
GCAGGAGCAGGGTGTGTCCACCCCACGTCCCCAGCCCACCGCCGAGGCACACCTGCCTCC
CCAGGAGCCTTTGCCTTAACGTCTCTGTGCCAGGTGGACAGCTTGGCAGGGTGGGGGGTT
GGAGGTTAAATCTGGTCTTCTGAAGTATTATTATTAATTATCTTTTTAAAGAGAGAAATA
TAAACATATATATTTTTACTATTAAAAATACTCAGTTTTTTTTAATAAAGTAGAACTTGA
TTTCATGTTTTATATGAGACATTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|33126317|gb|AAK95569.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|33126317|gb|AAK95569.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               204-323, - strand, RNAz p=0.561939
               

               
               404-523, - strand, RNAz p=0.510205
               

               
               764-883, + strand, RNAz p=0.568677

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               204-323, - strand, RNAz p=0.561939
               

               
               404-523, - strand, RNAz p=0.510205
               

               
               764-883, + strand, RNAz p=0.568677

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

Help | Less info


               
               164-1151, gnl|bosTau2|chr5 (24495793-24494825)

Aligned organism(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               164-1151, gnl|bosTau2|chr5 (24495793-24494825)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               cmu (0.55918)
               

               
               cag (0.453583)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               spl (0.286369)
               

               
               che (0.272628)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.55918)
               

               
               cag (0.453583)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               spl (0.286369)
               

               
               che (0.272628)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	204-323, - strand, RNAz p=0.561939
	404-523, - strand, RNAz p=0.510205
	764-883, + strand, RNAz p=0.568677

	cmu (0.55918)
	cag (0.453583)
	elu (0.385356)
	ese (0.379507)
	spl (0.286369)
	che (0.272628)
	cut (0.169924)
	cki (0.165235)
	cli (0.152812)
	csk (0.140746)
	cst (0.140036)
	pla (0.133672)
	cov (0.132153)
	ova (0.129132)
	sug (0.127291)
	cly (0.120642)
	pgl (0.118483)
	ebs (0.118301)
	cty (0.10408)
	jej (0.0989218)
	ldo (0.0970026)