Non-Coding RNA Search

Ss1.1-Pig3-SRG8025G04.5

Sequence:


               
               GAGCGCCTCCCTATGCAGACAGATGACCTACTCCCTGACTCGCTTTGCCATCTACGAGAC
CGTGCGGGACCAGGTGGCCAAGGGCAGCCAGGGTCCCCTGCCCTTCTACAAGAAGGTCTT
GCTGGGCTCCATCAGCGGGTGCATTGGCGGCTTCGTGGGGACTCCTGCGGACATGGGCAG
TGGGAGGATGCAGAATGACATGAAGCTGCCCCCGGATCATCGCCGCAACTACGCCCACGC
CCTGGACGGCCTGTACCGCGTGGCCCGCGAGGAGGGTCTGAAGAAGCTGTTCTCGGGCGC
GACCATGGCGTCCAGTCGAGGGATGCTGGTCACCGTGGGCCAGCTGTCCTGCTATGACCA
GGCCAAGCAGCTGGTCCTCAGCACGGGGCACCTGTCTGATGGCATCTTCACTCACTTCAT
TGCCAGCTTCATCGCGGGTGGATGTGCCACGGTCCTCTGCCAGCCCCTGGATGTGCTCAA
GACCCGCCTGATGAACGCCAAGGGCGAGTACCAGGGGGTCCTGCACTGCGCCATGGAGAC
GGCCAAGCTCGGGCCCTTGGCCTTTTACAAGGGCCTCGTGCCAGCCGGCATCCGCCTCAT
GCCCCACACCGTGCTCACCTTCGTGTTTCTGGAACAGCTTCGCAAACACTTTGGCATCAA
GGTGCCATCCTGATGTGGCCTTTGAGTGGCCGGGTCACGCCCAGCGCCCCCCCCCCCGCA
GTTTTTCCGGCGTCCAGGAGGGGGCGGCCAAGCTCGGCTTGAGCCCCACACCTGCCGTTG
GGCCCCGGCCCCTCCCCCCAGCCTGCCTGGGGGTCCGGAGACCATCCACCCTTCCCGAGC
GGCCAGCTTCACCTCCTCCCGCTGCCTACCTGGGGTCCAGCAGCTGCTTCTTTGCACAGT
GACCCCTCCGAGGCGGGGGGTGTCCACATCCAGGGGTTTCTTTGTCCCCAAGGAGGCAGT
GAACCCTGGAGCTGGGGAGGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGCCTCCCTATGCAGACAGATGACCTACTCCCTGACTCGCTTTGCCATCTACGAGAC
CGTGCGGGACCAGGTGGCCAAGGGCAGCCAGGGTCCCCTGCCCTTCTACAAGAAGGTCTT
GCTGGGCTCCATCAGCGGGTGCATTGGCGGCTTCGTGGGGACTCCTGCGGACATGGGCAG
TGGGAGGATGCAGAATGACATGAAGCTGCCCCCGGATCATCGCCGCAACTACGCCCACGC
CCTGGACGGCCTGTACCGCGTGGCCCGCGAGGAGGGTCTGAAGAAGCTGTTCTCGGGCGC
GACCATGGCGTCCAGTCGAGGGATGCTGGTCACCGTGGGCCAGCTGTCCTGCTATGACCA
GGCCAAGCAGCTGGTCCTCAGCACGGGGCACCTGTCTGATGGCATCTTCACTCACTTCAT
TGCCAGCTTCATCGCGGGTGGATGTGCCACGGTCCTCTGCCAGCCCCTGGATGTGCTCAA
GACCCGCCTGATGAACGCCAAGGGCGAGTACCAGGGGGTCCTGCACTGCGCCATGGAGAC
GGCCAAGCTCGGGCCCTTGGCCTTTTACAAGGGCCTCGTGCCAGCCGGCATCCGCCTCAT
GCCCCACACCGTGCTCACCTTCGTGTTTCTGGAACAGCTTCGCAAACACTTTGGCATCAA
GGTGCCATCCTGATGTGGCCTTTGAGTGGCCGGGTCACGCCCAGCGCCCCCCCCCCCGCA
GTTTTTCCGGCGTCCAGGAGGGGGCGGCCAAGCTCGGCTTGAGCCCCACACCTGCCGTTG
GGCCCCGGCCCCTCCCCCCAGCCTGCCTGGGGGTCCGGAGACCATCCACCCTTCCCGAGC
GGCCAGCTTCACCTCCTCCCGCTGCCTACCTGGGGTCCAGCAGCTGCTTCTTTGCACAGT
GACCCCTCCGAGGCGGGGGGTGTCCACATCCAGGGGTTTCTTTGTCCCCAAGGAGGCAGT
GAACCCTGGAGCTGGGGAGGGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13938431|gb|AAH07355.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13938431|gb|AAH07355.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               20-138, gnl|bosTau2|chr19 (45301769-45301887)
               

               
               20-138, gnl|Hg17|chr17 (77292910-77293028)
               

               
               20-138, gnl|Mm7|chr11 (120604002-120604120)
               


               
               570-792, gnl|bosTau2|chr19 (45304728-45304952)
               

               
               570-792, gnl|Hg17|chr17 (77297409-77297627)
               

               
               570-792, gnl|Mm7|chr11 (120607114-120607341)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-138, gnl|bosTau2|chr19 (45301769-45301887)
               

               
               20-138, gnl|Hg17|chr17 (77292910-77293028)
               

               
               20-138, gnl|Mm7|chr11 (120604002-120604120)
               


               
               570-792, gnl|bosTau2|chr19 (45304728-45304952)
               

               
               570-792, gnl|Hg17|chr17 (77297409-77297627)
               

               
               570-792, gnl|Mm7|chr11 (120607114-120607341)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	20-138, gnl\|bosTau2\|chr19 (45301769-45301887)
	20-138, gnl\|Hg17\|chr17 (77292910-77293028)
	20-138, gnl\|Mm7\|chr11 (120604002-120604120)

	570-792, gnl\|bosTau2\|chr19 (45304728-45304952)
	570-792, gnl\|Hg17\|chr17 (77297409-77297627)
	570-792, gnl\|Mm7\|chr11 (120607114-120607341)