Ss1.1-Pig3-SRG8025G13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAAAAGCTCAGCCAGAACATTGAGATGTGATTCCAGCATCATGAAGCTTTCTGGAGACA TTCACTTCATCAGGCATGAACAACAGCAGCTCGAAAAAAGAATTCAAGAACTCATTTCTG CCCTAGAAACTCTTTCTAAGAACTCAGATGAACCTGATGGCCCCCTTCCTGGCTCAGCCA AGGCTTCCAGTTCTGAGCAAATCTCAAATTTAAAGATGGTCCAGGGGGATTATCGCCATG AAATGAATCTTTTGGAATTCAAATTTAACTCACTTTCAACGAATCTATGTGAGCAAATTG AAAACCATCAAAAACGGACAGAAAGCCAGTTCATCAAATATGAACAAGACCACCTCGGCC ACATAAATAAGTGTCTGAAGCTCCTACAGGAGAAACTGGATATGTCTGAAAACAAAATGG AAGAAAAGTTACTGAAGCTTTCAAGCAAATTAGAGAATTTCATTAACATACAGAAACAGG AAGCAGAACTAAACAAAGTACACCATATAGAAAATAAACTGGCCAAAAAGATGAACCAAC TGGAAAAGTACATCTGGGGTGAATTAGAGAAAATGCAGAATGAATATCAATCAGGATTTA AATCGATTCATGACTCTCTCAGCTCCCTCCAACGAATACAGAAAACAAAGATGGATTTAG AGAAATATAAAGTACAGAAAGACCTAAAGAAATTACAGCGTAAGATAGTGGAACTCCAGG AAGTATAAACTGTCCGATCATCTTCTTTTCACCAGATAATGAAGTGGTTTTTTGGGAAAA AGAAAGTGCCTCTGGGATGTTAACTGCTTCCATTTCTTACCACCTTTTTAAGTAGATGAA TGTACCAGAAAACCCAATAAAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAAAAGCTCAGCCAGAACATTGAGATGTGATTCCAGCATCATGAAGCTTTCTGGAGACA TTCACTTCATCAGGCATGAACAACAGCAGCTCGAAAAAAGAATTCAAGAACTCATTTCTG CCCTAGAAACTCTTTCTAAGAACTCAGATGAACCTGATGGCCCCCTTCCTGGCTCAGCCA AGGCTTCCAGTTCTGAGCAAATCTCAAATTTAAAGATGGTCCAGGGGGATTATCGCCATG AAATGAATCTTTTGGAATTCAAATTTAACTCACTTTCAACGAATCTATGTGAGCAAATTG AAAACCATCAAAAACGGACAGAAAGCCAGTTCATCAAATATGAACAAGACCACCTCGGCC ACATAAATAAGTGTCTGAAGCTCCTACAGGAGAAACTGGATATGTCTGAAAACAAAATGG AAGAAAAGTTACTGAAGCTTTCAAGCAAATTAGAGAATTTCATTAACATACAGAAACAGG AAGCAGAACTAAACAAAGTACACCATATAGAAAATAAACTGGCCAAAAAGATGAACCAAC TGGAAAAGTACATCTGGGGTGAATTAGAGAAAATGCAGAATGAATATCAATCAGGATTTA AATCGATTCATGACTCTCTCAGCTCCCTCCAACGAATACAGAAAACAAAGATGGATTTAG AGAAATATAAAGTACAGAAAGACCTAAAGAAATTACAGCGTAAGATAGTGGAACTCCAGG AAGTATAAACTGTCCGATCATCTTCTTTTCACCAGATAATGAAGTGGTTTTTTGGGAAAA AGAAAGTGCCTCTGGGATGTTAACTGCTTCCATTTCTTACCACCTTTTTAAGTAGATGAA TGTACCAGAAAACCCAATAAAGCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 24-149, gnl|bosTau2|chr7 (59313159-59313284) | |
| 24-149, gnl|canFam2|chr3 (17022539-17022369) | |
| 24-149, gnl|dasNov1|scaffold_39147 (228-397) | |
| 24-149, gnl|echTel1|scaffold_319884 (85359-85529) | |
| 24-149, gnl|galGal2|chrW (3264639-3264802) | |
| 24-149, gnl|hg17|chr5 (94790046-94790216) | |
| 24-149, gnl|Hg17|chr5 (94790061-94790186) | |
| 24-149, gnl|loxAfr1|scaffold_81351 (10179-10348) | |
| 24-149, gnl|mm7|chr13 (73250028-73249858) | |
| 24-149, gnl|Mm7|chr13 (73250011-73249886) | |
| 24-149, gnl|monDom2|scaffold_20 (2497128-2496958) | |
| 24-149, gnl|oryCun1|scaffold_209899 (53140-52970) | |
| 24-149, gnl|panTro1|chr4 (20387741-20387571) | |
| 24-149, gnl|rheMac2|chr6 (91658869-91659039) | |
| 24-149, gnl|rn3|chr2 (3392692-3392522) | |
| 24-149, gnl|xenTro1|scaffold_45 (1764237-1764085) | |
| 263-399, gnl|bosTau2|chr7 (59328030-59328166) | |
| 263-399, gnl|canFam2|chr3 (17002961-17002781) | |
| 263-399, gnl|dasNov1|scaffold_39147 (12079-12264) | |
| 263-399, gnl|echTel1|scaffold_237611 (3586-3392) | |
| 263-399, gnl|hg17|chr5 (94807979-94808163) | |
| 263-399, gnl|Hg17|chr5 (94808022-94808158) | |
| 263-399, gnl|loxAfr1|scaffold_20402 (20842-21025) | |
| 263-399, gnl|mm7|chr13 (73225873-73225701) | |
| 263-399, gnl|Mm7|chr13 (73225840-73225704) | |
| 263-399, gnl|monDom2|scaffold_20 (2462332-2462147) | |
| 263-399, gnl|rheMac2|chr6 (91670636-91670820) | |
| 263-399, gnl|rn3|chr2 (3354905-3354733) | |
| 263-399, gnl|xenTro1|scaffold_45 (1756169-1756001) | |
| 592-864, gnl|bosTau2|chr7 (59331573-59331854) | |
| 592-864, gnl|canFam2|chr3 (16999278-16998862) | |
| 592-864, gnl|dasNov1|scaffold_39147 (15872-16275) | |
| 592-864, gnl|echTel1|scaffold_48021 (5141-4746) | |
| 592-864, gnl|hg17|chr5 (94811480-94811878) | |
| 592-864, gnl|Hg17|chr5 (94811606-94811888) | |
| 592-864, gnl|loxAfr1|scaffold_20402 (25174-25560) | |
| 592-864, gnl|mm7|chr13 (73213876-73213471) | |
| 592-864, gnl|Mm7|chr13 (73213746-73213456) | |
| 592-864, gnl|monDom2|scaffold_20 (2454477-2454061) | |
| 592-864, gnl|oryCun1|scaffold_206348 (72734-72315) | |
| 592-864, gnl|rheMac2|chr6 (91673758-91674155) | |
| 592-864, gnl|rn3|chr2 (3347352-3346949) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-149, gnl|bosTau2|chr7 (59313159-59313284) | |
| 24-149, gnl|canFam2|chr3 (17022539-17022369) | |
| 24-149, gnl|dasNov1|scaffold_39147 (228-397) | |
| 24-149, gnl|echTel1|scaffold_319884 (85359-85529) | |
| 24-149, gnl|galGal2|chrW (3264639-3264802) | |
| 24-149, gnl|hg17|chr5 (94790046-94790216) | |
| 24-149, gnl|Hg17|chr5 (94790061-94790186) | |
| 24-149, gnl|loxAfr1|scaffold_81351 (10179-10348) | |
| 24-149, gnl|mm7|chr13 (73250028-73249858) | |
| 24-149, gnl|Mm7|chr13 (73250011-73249886) | |
| 24-149, gnl|monDom2|scaffold_20 (2497128-2496958) | |
| 24-149, gnl|oryCun1|scaffold_209899 (53140-52970) | |
| 24-149, gnl|panTro1|chr4 (20387741-20387571) | |
| 24-149, gnl|rheMac2|chr6 (91658869-91659039) | |
| 24-149, gnl|rn3|chr2 (3392692-3392522) | |
| 24-149, gnl|xenTro1|scaffold_45 (1764237-1764085) | |
| 263-399, gnl|bosTau2|chr7 (59328030-59328166) | |
| 263-399, gnl|canFam2|chr3 (17002961-17002781) | |
| 263-399, gnl|dasNov1|scaffold_39147 (12079-12264) | |
| 263-399, gnl|echTel1|scaffold_237611 (3586-3392) | |
| 263-399, gnl|hg17|chr5 (94807979-94808163) | |
| 263-399, gnl|Hg17|chr5 (94808022-94808158) | |
| 263-399, gnl|loxAfr1|scaffold_20402 (20842-21025) | |
| 263-399, gnl|mm7|chr13 (73225873-73225701) | |
| 263-399, gnl|Mm7|chr13 (73225840-73225704) | |
| 263-399, gnl|monDom2|scaffold_20 (2462332-2462147) | |
| 263-399, gnl|rheMac2|chr6 (91670636-91670820) | |
| 263-399, gnl|rn3|chr2 (3354905-3354733) | |
| 263-399, gnl|xenTro1|scaffold_45 (1756169-1756001) | |
| 592-864, gnl|bosTau2|chr7 (59331573-59331854) | |
| 592-864, gnl|canFam2|chr3 (16999278-16998862) | |
| 592-864, gnl|dasNov1|scaffold_39147 (15872-16275) | |
| 592-864, gnl|echTel1|scaffold_48021 (5141-4746) | |
| 592-864, gnl|hg17|chr5 (94811480-94811878) | |
| 592-864, gnl|Hg17|chr5 (94811606-94811888) | |
| 592-864, gnl|loxAfr1|scaffold_20402 (25174-25560) | |
| 592-864, gnl|mm7|chr13 (73213876-73213471) | |
| 592-864, gnl|Mm7|chr13 (73213746-73213456) | |
| 592-864, gnl|monDom2|scaffold_20 (2454477-2454061) | |
| 592-864, gnl|oryCun1|scaffold_206348 (72734-72315) | |
| 592-864, gnl|rheMac2|chr6 (91673758-91674155) | |
| 592-864, gnl|rn3|chr2 (3347352-3346949) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.831255) | |
| cte (0.29274) | |
| tra (0.123092) |