Ss1.1-Pig3-SRG8025H23.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCTTCAACAATCTACAGTTGGAGGTGCACATTAATTGCATTTATGATTACATTGAAAT CTTTGATGAATCACCGGGTAGCAATACTTCGCTGGGGAAAATTTGTAATCACACCAGCCA GATATTCACATCTTCTTACAACCGAATGACAGTTCGATTTCGGAGTGATGGCAGTGTCCA AAAACCTGGCTTTTCTGCTTGGTATAACTCTTTTCCAAGAGACGCCAGCTTGAGATTGGT CAACTCGAACTCCTCCTACCCCTCATGTGCTGGGCGTGTGGAAATTTACCAAGGTGGCCG ATGGGGAACTGTTTGTGATGATGGCTGGGACATCCAGGATGCCCAAGTGGTCTGCAGACA GCTGGGGTGTGGAAATGCAGTGTCGGCCCCAGGAAACGCTTATTTCGGCCCCGGCTCTGG CCCCATCACCTTGGATGACGTGGCGTGCTCGGGGACGGAATCCACTCTCTGGCAGTGCCG GAACCGAGGCTGGTTCTCCCATAACTGTGGCCACAGTGAAGATGCTGGAGTCATTTGCTC AGTTCCTGTTTTCACCACCACCCCTCCCGCCACAAATTATTCCTGCGGAGGCTTCCTGTC CCAGGCGGCGGGGGGCTTTAACAGCCCCTTCTACCCTGGGAACTACCCGAACAACGCCAA CTGCGTGTGGGACATCGAAGTTCAGAACAACTATCGGGTGACCGTGGTCTTCAGAGACGT CCAGCTTGAAGGCGGCTGTAACTTCGATTACATTGAGGTGTTTGACGGCCCCTACCGCAG CTCCCCGCTGCTTGCCCGGGTCTGCAATGGGGCAAGTGGCTCCTTCACCTCCTCGTCCAA CTTCATGTCCATTCGCTTCATCAGCGACGTCAGTGTCACGAGGGCAGGGTTCCGGGCTAA CTACTACTCCAGTCCTTCCTCTGGGAGCACCCGGCTGCATTGCCTGCAGAATCACATGCA AGCCAGCGTCAGCACGAGCTACCTCCAATCCCTGGGCTACTCCGCCAGGGACCTTGTCAT TCCCGGCTGGGAGTGGAGCTACCAGTGTCAGCCCCAGATTACGTCTACCCAGGTGACATT CACGATTCCCTACTCCAGCTGTGGCACCATCCAGCGGGTGGACAATGACACCATCACCTA TTCCAACTCCCTCAGAGCGGCTGTCTCAAGTGGCATCATCAAGAGGAAGAAGGACCTCAA CATGTACGTCAGCTGCAGAATGCTCCAGAACACCTGGGTTAACACCGTGTACATTGCTAA CGACACCCTCGAGGTCCAGAACGTGCAGTATGGCAACTTCGACGTCAACATTTCCTTTTT TACGTCCTCTTCGTTCTTATATCCCGTGAGGAGCAGCCCATACTACGTGGACCTGAACCA GAATCTGTACCTTCAGGCTGAGCTCCTCCATGCCAACGCCTCCCTGGCCTTATTTGTGGA CACCTGTGTGGCATCGCCATATCCCAATGACTTTACAACTTTGACTTACGACCTCATCCG GAGCGGGTGTGTGAAGGACGAAACCTACCAGTCCTACTCTCAGCCGTCGCCCCGCATCGT CCGCTTCAAGTTCAGTTCCTTCCACTTCCTGAGCCGCTTCCCCTCCGTGTACCTGCAGTG TAAGATGGTCGTGTGCAGGGCGTTCGACTCCTCCTCCCGCTGCCGCAGAGGCTGCGTGGT GAGGTCCAAGAGGGACGTGGGCTCCTACCAGGAGAAGGTGGATGTTGTCCTGGGACCCAT CCAGCTGCAGACCCTGCACGCTGAGAAGAGGAGCCTGGACCAGCCGGCGGTTGACCTGGA GGAGAAGGCCAGCGCCCAGGGGAGCTACGACGGTGCTGCTATCTCTGCTGGGATCTTTCT CGTCGTGGTCTTGGCCGTGGCAGCCTTCACCCTGGGGAGGCGCGGCCGTGCTGCCGACGG CCAGCCTCTGATCTCTAAGACATGATGCAGGGAAGGGCGCACGGTGCTCAGAGGTCCCCG AGCTCCGGAGCCCCCGGAGGAAGGAAGAAACCAGGGTCCAGAGCTGGGCACCCAGAGCAC CCCACTCGCTTCCTCTGGCCCAGGTGCATGGTGGGGGTGGGTGAGAAGGACGGGAGTAGG TTTTCCCAGAAACACCGCCTTGGTGCTGGGACAAAACGCCAGGCCAGCAGGTACCAGAAC CTGAAATCCTGCCTGCAGCCATGAGCCACACTAGAGGCAGCAGCACTTTTCTGGTTAGAA CTTACTTTCTGATCTTTTATGGGCTTCCGGGGCCTGTCGTGTATATCTTAGCCTTTGCTT ATTACAGGACCAGCTGAATAAAGAACTTTTTTGAAAGCAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCTTCAACAATCTACAGTTGGAGGTGCACATTAATTGCATTTATGATTACATTGAAAT CTTTGATGAATCACCGGGTAGCAATACTTCGCTGGGGAAAATTTGTAATCACACCAGCCA GATATTCACATCTTCTTACAACCGAATGACAGTTCGATTTCGGAGTGATGGCAGTGTCCA AAAACCTGGCTTTTCTGCTTGGTATAACTCTTTTCCAAGAGACGCCAGCTTGAGATTGGT CAACTCGAACTCCTCCTACCCCTCATGTGCTGGGCGTGTGGAAATTTACCAAGGTGGCCG ATGGGGAACTGTTTGTGATGATGGCTGGGACATCCAGGATGCCCAAGTGGTCTGCAGACA GCTGGGGTGTGGAAATGCAGTGTCGGCCCCAGGAAACGCTTATTTCGGCCCCGGCTCTGG CCCCATCACCTTGGATGACGTGGCGTGCTCGGGGACGGAATCCACTCTCTGGCAGTGCCG GAACCGAGGCTGGTTCTCCCATAACTGTGGCCACAGTGAAGATGCTGGAGTCATTTGCTC AGTTCCTGTTTTCACCACCACCCCTCCCGCCACAAATTATTCCTGCGGAGGCTTCCTGTC CCAGGCGGCGGGGGGCTTTAACAGCCCCTTCTACCCTGGGAACTACCCGAACAACGCCAA CTGCGTGTGGGACATCGAAGTTCAGAACAACTATCGGGTGACCGTGGTCTTCAGAGACGT CCAGCTTGAAGGCGGCTGTAACTTCGATTACATTGAGGTGTTTGACGGCCCCTACCGCAG CTCCCCGCTGCTTGCCCGGGTCTGCAATGGGGCAAGTGGCTCCTTCACCTCCTCGTCCAA CTTCATGTCCATTCGCTTCATCAGCGACGTCAGTGTCACGAGGGCAGGGTTCCGGGCTAA CTACTACTCCAGTCCTTCCTCTGGGAGCACCCGGCTGCATTGCCTGCAGAATCACATGCA AGCCAGCGTCAGCACGAGCTACCTCCAATCCCTGGGCTACTCCGCCAGGGACCTTGTCAT TCCCGGCTGGGAGTGGAGCTACCAGTGTCAGCCCCAGATTACGTCTACCCAGGTGACATT CACGATTCCCTACTCCAGCTGTGGCACCATCCAGCGGGTGGACAATGACACCATCACCTA TTCCAACTCCCTCAGAGCGGCTGTCTCAAGTGGCATCATCAAGAGGAAGAAGGACCTCAA CATGTACGTCAGCTGCAGAATGCTCCAGAACACCTGGGTTAACACCGTGTACATTGCTAA CGACACCCTCGAGGTCCAGAACGTGCAGTATGGCAACTTCGACGTCAACATTTCCTTTTT TACGTCCTCTTCGTTCTTATATCCCGTGAGGAGCAGCCCATACTACGTGGACCTGAACCA GAATCTGTACCTTCAGGCTGAGCTCCTCCATGCCAACGCCTCCCTGGCCTTATTTGTGGA CACCTGTGTGGCATCGCCATATCCCAATGACTTTACAACTTTGACTTACGACCTCATCCG GAGCGGGTGTGTGAAGGACGAAACCTACCAGTCCTACTCTCAGCCGTCGCCCCGCATCGT CCGCTTCAAGTTCAGTTCCTTCCACTTCCTGAGCCGCTTCCCCTCCGTGTACCTGCAGTG TAAGATGGTCGTGTGCAGGGCGTTCGACTCCTCCTCCCGCTGCCGCAGAGGCTGCGTGGT GAGGTCCAAGAGGGACGTGGGCTCCTACCAGGAGAAGGTGGATGTTGTCCTGGGACCCAT CCAGCTGCAGACCCTGCACGCTGAGAAGAGGAGCCTGGACCAGCCGGCGGTTGACCTGGA GGAGAAGGCCAGCGCCCAGGGGAGCTACGACGGTGCTGCTATCTCTGCTGGGATCTTTCT CGTCGTGGTCTTGGCCGTGGCAGCCTTCACCCTGGGGAGGCGCGGCCGTGCTGCCGACGG CCAGCCTCTGATCTCTAAGACATGATGCAGGGAAGGGCGCACGGTGCTCAGAGGTCCCCG AGCTCCGGAGCCCCCGGAGGAAGGAAGAAACCAGGGTCCAGAGCTGGGCACCCAGAGCAC CCCACTCGCTTCCTCTGGCCCAGGTGCATGGTGGGGGTGGGTGAGAAGGACGGGAGTAGG TTTTCCCAGAAACACCGCCTTGGTGCTGGGACAAAACGCCAGGCCAGCAGGTACCAGAAC CTGAAATCCTGCCTGCAGCCATGAGCCACACTAGAGGCAGCAGCACTTTTCTGGTTAGAA CTTACTTTCTGATCTTTTATGGGCTTCCGGGGCCTGTCGTGTATATCTTAGCCTTTGCTT ATTACAGGACCAGCTGAATAAAGAACTTTTTTGAAAGCAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 220-542, gnl|bosTau2|chr26 (28339089-28338767) | |
| 220-542, gnl|Hg17|chr10 (124380465-124380787) | |
| 220-542, gnl|Mm7|chr7 (127459950-127460226) | |
| 265-538, gnl|bosTau2|chr25 (31262291-31262018) | |
| 265-538, gnl|canFam2|chr6 (10556365-10556707) | |
| 265-538, gnl|danRer3|chr16 (6035063-6034727) | |
| 265-538, gnl|dasNov1|scaffold_5072 (90218-89925) | |
| 265-538, gnl|echTel1|scaffold_211351 (47-393) | |
| 265-538, gnl|fr1|chrUn (227824877-227824569) | |
| 265-538, gnl|galGal2|chr19 (3963531-3963200) | |
| 265-538, gnl|hg17|chr7 (75664007-75664349) | |
| 265-538, gnl|Hg17|chr7 (75664312-75664039) | |
| 265-538, gnl|loxAfr1|scaffold_121213 (4523-4215) | |
| 265-538, gnl|mm7|chr5 (134932152-134932495) | |
| 265-538, gnl|Mm7|chr5 (134932457-134932184) | |
| 265-538, gnl|monDom2|scaffold_77 (4763493-4763149) | |
| 265-538, gnl|oryCun1|scaffold_155068 (6303-5960) | |
| 265-538, gnl|panTro1|chr6 (76764712-76765054) | |
| 265-538, gnl|rheMac2|chr3 (49984514-49984205) | |
| 265-538, gnl|rn3|chr12 (21820222-21819879) | |
| 265-538, gnl|tetNig1|chr7 (1873470-1873162) | |
| 265-538, gnl|xenTro1|scaffold_38 (250739-250419) | |
| 724-930, gnl|bosTau2|chr26 (28334510-28334304) | |
| 724-930, gnl|Hg17|chr10 (124385497-124385703) | |
| 724-930, gnl|Mm7|chr7 (127464671-127464877) | |
| 1117-1508, gnl|bosTau2|chr26 (28327082-28326691) | |
| 1117-1508, gnl|Hg17|chr10 (124389545-124389957) | |
| 1117-1508, gnl|Mm7|chr7 (127470347-127470738) | |
| 1778-2320, gnl|bosTau2|chr26 (28324006-28323446) | |
| 1778-2320, gnl|Hg17|chr10 (124394557-124395460) | |
| 1778-2320, gnl|Mm7|chr7 (127474818-127475378) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 220-542, gnl|bosTau2|chr26 (28339089-28338767) | |
| 220-542, gnl|Hg17|chr10 (124380465-124380787) | |
| 220-542, gnl|Mm7|chr7 (127459950-127460226) | |
| 265-538, gnl|bosTau2|chr25 (31262291-31262018) | |
| 265-538, gnl|canFam2|chr6 (10556365-10556707) | |
| 265-538, gnl|danRer3|chr16 (6035063-6034727) | |
| 265-538, gnl|dasNov1|scaffold_5072 (90218-89925) | |
| 265-538, gnl|echTel1|scaffold_211351 (47-393) | |
| 265-538, gnl|fr1|chrUn (227824877-227824569) | |
| 265-538, gnl|galGal2|chr19 (3963531-3963200) | |
| 265-538, gnl|hg17|chr7 (75664007-75664349) | |
| 265-538, gnl|Hg17|chr7 (75664312-75664039) | |
| 265-538, gnl|loxAfr1|scaffold_121213 (4523-4215) | |
| 265-538, gnl|mm7|chr5 (134932152-134932495) | |
| 265-538, gnl|Mm7|chr5 (134932457-134932184) | |
| 265-538, gnl|monDom2|scaffold_77 (4763493-4763149) | |
| 265-538, gnl|oryCun1|scaffold_155068 (6303-5960) | |
| 265-538, gnl|panTro1|chr6 (76764712-76765054) | |
| 265-538, gnl|rheMac2|chr3 (49984514-49984205) | |
| 265-538, gnl|rn3|chr12 (21820222-21819879) | |
| 265-538, gnl|tetNig1|chr7 (1873470-1873162) | |
| 265-538, gnl|xenTro1|scaffold_38 (250739-250419) | |
| 724-930, gnl|bosTau2|chr26 (28334510-28334304) | |
| 724-930, gnl|Hg17|chr10 (124385497-124385703) | |
| 724-930, gnl|Mm7|chr7 (127464671-127464877) | |
| 1117-1508, gnl|bosTau2|chr26 (28327082-28326691) | |
| 1117-1508, gnl|Hg17|chr10 (124389545-124389957) | |
| 1117-1508, gnl|Mm7|chr7 (127470347-127470738) | |
| 1778-2320, gnl|bosTau2|chr26 (28324006-28323446) | |
| 1778-2320, gnl|Hg17|chr10 (124394557-124395460) | |
| 1778-2320, gnl|Mm7|chr7 (127474818-127475378) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| duo (1.90081) | |
| col (1.75507) | |
| cje (1.15664) | |
| nco (0.808669) | |
| nmm (0.265604) | |
| nje (0.16592) | |
| clu (0.119646) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (1.90081) | |
| col (1.75507) | |
| cje (1.15664) | |
| nco (0.808669) | |
| nmm (0.265604) | |
| nje (0.16592) | |
| clu (0.119646) |