Non-Coding RNA Search

Ss1.1-Pig3-SRG8025I19.3

Sequence:


               
               CCTGGCCATGACCGGGGCTGGGATCGACAGGCACCTCTTCTGCCTTTACGTGGTCTCCAA
GTACCTGGGGGTCAGCTCCCCTTTCCTGGCTGAGGTCAGTGTCGATGGGCGTGTCCTCAC
GCCGGCTCCCCGCGGGTCTCCGCCTGTTCCCGCACTTGCCCTGGACGGCTGGGCCCAGCC
TTCCCGCTGCACACCCCACCCAGGCCTGCGGACCTGGCATGAAGCAGGGACGTGGAGCTG
TGGACTTGGTGTTTCTTGCCCTTTGGCAAAGGCCTCAGACGTGTCAGGTGGCGACAGTGC
TCGTGAGAGAGGTGCAGAGGCTAAAGGGAATCCGTGTTCGGCACCTCCAGGACCTGGACA
CTGACACTGAAGCAGGGGTGTGGGTGTTTGAGGAACAGCAGGAAGGGAGGGGGCTGGCAG
GCCACGTGATTGAGGGCTTTGTGCCGATGCCGCAGAGACAGTGAGAACAGACCTTGGGGA
CCAGGGGCAGCAGTCGGGGAGGTCCTGCATTCCATCCCTTCCATATCCGCAGCCAGGACG
GTGCCTGGCTCACACAGGTGCTCGGGCCTCACCTGTCCGCAGGTGTGGGCAGAGCGCATG
GCATCTGACTGCTGGGGCCTCCCTGTTGCAGGTGCTCTCAGAACCCTGGCGCCTCTCCAC
CAGCCAGATTGCCCAATTCCAGATCCGCATGTTTGACCCAAACAAGTACCCCAATCACCT
GGGTGCTGGCGGCGGCTTTGGCCCTGTGGCCGATGACGGCTACGGGGTCTCCTACATGAT
CGCGGGCGAGAACACCATCTTCTTCCACGTCTCCAGCAAGTTCTCAAGCTCAGAGACGAA
CGCCCAGCGCTTCGGGAACCACATCCGCCAGGCTCTGCTGGACCTCGCCGATCTCTTCCA
AGTTCCCAAAGCTGACAGCTGAGGGCTGGAGAAACACCAGATGCCCTTTTGGCCCCGCAT
CGTGGAGGAAGGGGCCTGTGGTCAGCTCGCAGGCACAGGGGTGGCCGTGCGCAGGTGCCC
AGGCTCCAAGGACACCTCTGGTAGCAGCTGCTGCCTGGGCAGGGCTGCTCCCAAGGGCTC
AGTGGTGGAAGTCGGGCTGCAGCAGGGAGGGAATCTTGATTTTTTTTTTTTCTTGCTAGA
TGCTAATAAAAATAAGTTTGTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGCCATGACCGGGGCTGGGATCGACAGGCACCTCTTCTGCCTTTACGTGGTCTCCAA
GTACCTGGGGGTCAGCTCCCCTTTCCTGGCTGAGGTCAGTGTCGATGGGCGTGTCCTCAC
GCCGGCTCCCCGCGGGTCTCCGCCTGTTCCCGCACTTGCCCTGGACGGCTGGGCCCAGCC
TTCCCGCTGCACACCCCACCCAGGCCTGCGGACCTGGCATGAAGCAGGGACGTGGAGCTG
TGGACTTGGTGTTTCTTGCCCTTTGGCAAAGGCCTCAGACGTGTCAGGTGGCGACAGTGC
TCGTGAGAGAGGTGCAGAGGCTAAAGGGAATCCGTGTTCGGCACCTCCAGGACCTGGACA
CTGACACTGAAGCAGGGGTGTGGGTGTTTGAGGAACAGCAGGAAGGGAGGGGGCTGGCAG
GCCACGTGATTGAGGGCTTTGTGCCGATGCCGCAGAGACAGTGAGAACAGACCTTGGGGA
CCAGGGGCAGCAGTCGGGGAGGTCCTGCATTCCATCCCTTCCATATCCGCAGCCAGGACG
GTGCCTGGCTCACACAGGTGCTCGGGCCTCACCTGTCCGCAGGTGTGGGCAGAGCGCATG
GCATCTGACTGCTGGGGCCTCCCTGTTGCAGGTGCTCTCAGAACCCTGGCGCCTCTCCAC
CAGCCAGATTGCCCAATTCCAGATCCGCATGTTTGACCCAAACAAGTACCCCAATCACCT
GGGTGCTGGCGGCGGCTTTGGCCCTGTGGCCGATGACGGCTACGGGGTCTCCTACATGAT
CGCGGGCGAGAACACCATCTTCTTCCACGTCTCCAGCAAGTTCTCAAGCTCAGAGACGAA
CGCCCAGCGCTTCGGGAACCACATCCGCCAGGCTCTGCTGGACCTCGCCGATCTCTTCCA
AGTTCCCAAAGCTGACAGCTGAGGGCTGGAGAAACACCAGATGCCCTTTTGGCCCCGCAT
CGTGGAGGAAGGGGCCTGTGGTCAGCTCGCAGGCACAGGGGTGGCCGTGCGCAGGTGCCC
AGGCTCCAAGGACACCTCTGGTAGCAGCTGCTGCCTGGGCAGGGCTGCTCCCAAGGGCTC
AGTGGTGGAAGTCGGGCTGCAGCAGGGAGGGAATCTTGATTTTTTTTTTTTCTTGCTAGA
TGCTAATAAAAATAAGTTTGTATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               557-658, - strand, RNAz p=0.951489

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               557-658, - strand, RNAz p=0.951489

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-150, gnl|bosTau2|chr5 (75700926-75701077)
               

               
               1-150, gnl|Hg17|chr22 (49299557-49299323)
               

               
               1-150, gnl|Mm7|chr15 (89501703-89501568)
               


               
               400-747, gnl|bosTau2|chr5 (75701315-75701628)
               

               
               400-747, gnl|Mm7|chr15 (89501194-89500708)
               


               
               838-1163, gnl|bosTau2|chr5 (75702419-75702740)
               

               
               838-1163, gnl|Hg17|chr22 (49297995-49297668)
               

               
               838-1163, gnl|Mm7|chr15 (89499858-89499507)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-150, gnl|bosTau2|chr5 (75700926-75701077)
               

               
               1-150, gnl|Hg17|chr22 (49299557-49299323)
               

               
               1-150, gnl|Mm7|chr15 (89501703-89501568)
               


               
               400-747, gnl|bosTau2|chr5 (75701315-75701628)
               

               
               400-747, gnl|Mm7|chr15 (89501194-89500708)
               


               
               838-1163, gnl|bosTau2|chr5 (75702419-75702740)
               

               
               838-1163, gnl|Hg17|chr22 (49297995-49297668)
               

               
               838-1163, gnl|Mm7|chr15 (89499858-89499507)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               che (2.04471)
               

               
               nms (0.427716)
               

               
               ton (0.351)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               hlv (0.278513)
               

               
               fli (0.202881)
               

               
               ldo (0.194005)
               

               
               nep (0.183925)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (2.04471)
               

               
               nms (0.427716)
               

               
               ton (0.351)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               hlv (0.278513)
               

               
               fli (0.202881)
               

               
               ldo (0.194005)
               

               
               nep (0.183925)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

	1-150, gnl\|bosTau2\|chr5 (75700926-75701077)
	1-150, gnl\|Hg17\|chr22 (49299557-49299323)
	1-150, gnl\|Mm7\|chr15 (89501703-89501568)

	400-747, gnl\|bosTau2\|chr5 (75701315-75701628)
	400-747, gnl\|Mm7\|chr15 (89501194-89500708)

	838-1163, gnl\|bosTau2\|chr5 (75702419-75702740)
	838-1163, gnl\|Hg17\|chr22 (49297995-49297668)
	838-1163, gnl\|Mm7\|chr15 (89499858-89499507)

	che (2.04471)
	nms (0.427716)
	ton (0.351)
	pty (0.285429)
	cst (0.280073)
	hlv (0.278513)
	fli (0.202881)
	ldo (0.194005)
	nep (0.183925)
	lnt (0.142308)
	ssp (0.13552)
	pla (0.133672)
	ebs (0.118301)