Non-Coding RNA Search

Ss1.1-Pig3-SRG8025J18.5

Sequence:


               
               CGGAGCCCTGTGGCGTGCGAGGCCGGTGCGGACGCCTTGAACTACCTGTCATTTACTCCA
GTGTCCATAGTGATGCTACAGGACAGAGTGGAATGGATAAAAACATTGGCGAGCAACTCA
ATAAAGCTTATGAAGCCTTTCGGCAGGCATGCATGGATAGAGATTCTGCAGTAAAAGAAC
TACAGCAAAAGGAAATAAGTGGTTGGAAAATATGAAAAATGAGAATTTTCAGTGTCATCA
ATAGGAAAAAAATCAATTTATAGAACTCCATTTTAATATTTATGAAACCCGTGAAAACTT
GTACAGCTGTATGTCCAAAATTATAGAGAATATGCTGCCTTATATCTGAAGATGGATTGA
AATTTTGCCTGGATAAAAGGACATTTCTTAAGATAAGCTTTTTGCTTTATTTATGATAGT
CAAGAGTGTATATGAATAACCATTTTTAGTAAATTAAAAATGTGTACTATATTTGATCAC
TATTGTTGTAACTTTTGTTTCTGAACACTGAAAAAGAATAGAGAGTACATTATGGCACAA
GTACCTAAGTACCTGTTTACCTCTTTAGATGCTGGTAGACCACTTGTTTTGCTAGTCTTT
GGAATTGGAAGGAGTGTCAAATACACAGAAGCCAGAGTCATCTTGGCCAGATGGTGTTTG
ATACAGATGGATGGTTAGTTGTCATGCAGATCTCCTAGTTGGTAACTTGTTGCTGCCATC
TGACTCAAAGAATCATTCACACACACTGGCTGTCAAAAGCATCTTCTCTTCTGTCTGTTT
TAGCTGTCATGTCTGTGCTCTGTACAGAAGTGTTGACAAGACATTGCTGTTGTACATTTT
CAATGTGGTTGTTAGTGATTTTTCTGTTTTGTAGGGTCTTTGGTAGTGCTGGAATGTACT
TGCTTTGTAACTATATTGTTTTGTTTTGTTTTTTTTCAAAAATACTATGACAGTGCAACA
ATTATCTGATCTTTTAAGAAGATTTTTTTAGATAAGTTTATTAACATCTGTTCAATGAAC
AAAATCATTTAATAAAAAGAAAAAAAAAAAAAAAAAAAAGAACAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGCCCTGTGGCGTGCGAGGCCGGTGCGGACGCCTTGAACTACCTGTCATTTACTCCA
GTGTCCATAGTGATGCTACAGGACAGAGTGGAATGGATAAAAACATTGGCGAGCAACTCA
ATAAAGCTTATGAAGCCTTTCGGCAGGCATGCATGGATAGAGATTCTGCAGTAAAAGAAC
TACAGCAAAAGGAAATAAGTGGTTGGAAAATATGAAAAATGAGAATTTTCAGTGTCATCA
ATAGGAAAAAAATCAATTTATAGAACTCCATTTTAATATTTATGAAACCCGTGAAAACTT
GTACAGCTGTATGTCCAAAATTATAGAGAATATGCTGCCTTATATCTGAAGATGGATTGA
AATTTTGCCTGGATAAAAGGACATTTCTTAAGATAAGCTTTTTGCTTTATTTATGATAGT
CAAGAGTGTATATGAATAACCATTTTTAGTAAATTAAAAATGTGTACTATATTTGATCAC
TATTGTTGTAACTTTTGTTTCTGAACACTGAAAAAGAATAGAGAGTACATTATGGCACAA
GTACCTAAGTACCTGTTTACCTCTTTAGATGCTGGTAGACCACTTGTTTTGCTAGTCTTT
GGAATTGGAAGGAGTGTCAAATACACAGAAGCCAGAGTCATCTTGGCCAGATGGTGTTTG
ATACAGATGGATGGTTAGTTGTCATGCAGATCTCCTAGTTGGTAACTTGTTGCTGCCATC
TGACTCAAAGAATCATTCACACACACTGGCTGTCAAAAGCATCTTCTCTTCTGTCTGTTT
TAGCTGTCATGTCTGTGCTCTGTACAGAAGTGTTGACAAGACATTGCTGTTGTACATTTT
CAATGTGGTTGTTAGTGATTTTTCTGTTTTGTAGGGTCTTTGGTAGTGCTGGAATGTACT
TGCTTTGTAACTATATTGTTTTGTTTTGTTTTTTTTCAAAAATACTATGACAGTGCAACA
ATTATCTGATCTTTTAAGAAGATTTTTTTAGATAAGTTTATTAACATCTGTTCAATGAAC
AAAATCATTTAATAAAAAGAAAAAAAAAAAAAAAAAAAAGAACAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62822236|gb|AAY14785.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62822236|gb|AAY14785.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               553-672, - strand, RNAz p=0.928164

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               553-672, - strand, RNAz p=0.928164

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               190-1038, gnl|bosTau2|chr2 (19974012-19973174)
               

               
               190-1038, gnl|Hg17|chr2 (161881435-161882437)
               

               
               190-1038, gnl|Mm7|chr2 (61553979-61555031)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               190-1038, gnl|bosTau2|chr2 (19974012-19973174)
               

               
               190-1038, gnl|Hg17|chr2 (161881435-161882437)
               

               
               190-1038, gnl|Mm7|chr2 (61553979-61555031)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               eje (0.0988338)

	190-1038, gnl\|bosTau2\|chr2 (19974012-19973174)
	190-1038, gnl\|Hg17\|chr2 (161881435-161882437)
	190-1038, gnl\|Mm7\|chr2 (61553979-61555031)