Non-Coding RNA Search

Ss1.1-Pig3-SRG8025K10.3

Sequence:


               
               CCACCCCTCTGGACTTGTTCAAGTTCTACGTGGAGGAGTTGAAGGCACGATTCCATGATG
AGAAGAAGATCATTAAGGACATCCTTAAGGACCGGGGCTTCTGCGTGGAAGTGAACACAG
CCTTTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGATGCAG
GCAACATCAAGCTGACTTTCAATAGTCTGCTGGAAAAAGCAGAGGCACGGGAGAGAGAGC
GGGAGAAGGAGGAGGCACGCAGGCTGCGGCGCAGGGAAGCTGCCTTTCGAAGCATGCTGA
GGCAGGCTGTGCCTGCTCTGGAGCTGGGCACTGCCTGGGAAGAGGTCCGTGAGCGCTTTG
TGTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGAGGATCCGGCTCTTCCGGG
AGTTCCTGCAGGTACTGGAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAACACG
GCAGAAAGAGCAAGAAGCACCATCGCAAGCGTTCGCACTCGCCTTCAGGCTCCGAGTCAG
AAGAGGAGGAGCTGCCCCCACCATCTCTCCGGCCCCCCAGGCGGAGGCGGCGGAACCCCT
CAGAGTCGGGCTCCGAGCCCTCTTCCTCACTTGATTCTGTTGAAAGTGGGGGTGCTGCCC
TTGGAGGACGGGGTTCCCCATCCTCACGCCTTCTCCTTGGATCAGATCATGGTCTTCGCA
AAGCCAAGAAACCAAAAAAGAAAACCAAGAAGAGAAGACACAAGTCGAACAGTCCCGAGA
GCGAGACAGACCCTGAGGAGAAAGCTGGCAAGGAGAGTGATGAGAAAGAACCAGAACAGG
ACAAGGACAGGGACCTCCGGCGGGCAGAGCTCCCTAACCGCTCCCCAGGCTTTGGAATCA
AGAAGGAGAAGACGGGCTGGGACACGTCGGAAAGTGAGCTGAGCGAGGGAGAGCTGGAAA
GACGGCGGCGGACACTCCTGCAGCAACTAGATGACCACCAGTGACCCAACGAGCCCCCCT
GCCCCGTCAGTGTGAGGTTGTGGCCTAGGTCACCCTCACCGTCCACTCCAGACTTCTTCC
TTAGTCGGGTCTGTGTCCAGTTTTCCTCAAGTAACCCCAACCCCAACACACCGCAGCCAG
CACCTCCCCAGGTTGCTCGTGGTGTTCAAGGTCCCCCACTTCCCGGACAACTAGTGCAGT
CCTTGCCCTCAGCCCCAGATCAGAGATTGGTGGTGGATGCCGTGTGGGGAGGGTGGTGCC
AGTAGATAAAATGTGAGGAGGGGCCTCTAGGAAGAGTGACAGGCCGGTGGACACAGCCTG
GGTGGCAGAGGGCGGGGTCCCTACCCGCTAGCGTCAGTGCCTGCTCCTGCCTGCCCAGGC
CCTTGGGCTTCCACCACTCCTTCCTCCAGCCCCAGGGCCTAGTGTATGTGTGTTCTGTTT
TGCTTTTGTTTTTTAAATAACAGTATTTATAAAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCCCTCTGGACTTGTTCAAGTTCTACGTGGAGGAGTTGAAGGCACGATTCCATGATG
AGAAGAAGATCATTAAGGACATCCTTAAGGACCGGGGCTTCTGCGTGGAAGTGAACACAG
CCTTTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGATGCAG
GCAACATCAAGCTGACTTTCAATAGTCTGCTGGAAAAAGCAGAGGCACGGGAGAGAGAGC
GGGAGAAGGAGGAGGCACGCAGGCTGCGGCGCAGGGAAGCTGCCTTTCGAAGCATGCTGA
GGCAGGCTGTGCCTGCTCTGGAGCTGGGCACTGCCTGGGAAGAGGTCCGTGAGCGCTTTG
TGTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGAGGATCCGGCTCTTCCGGG
AGTTCCTGCAGGTACTGGAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAACACG
GCAGAAAGAGCAAGAAGCACCATCGCAAGCGTTCGCACTCGCCTTCAGGCTCCGAGTCAG
AAGAGGAGGAGCTGCCCCCACCATCTCTCCGGCCCCCCAGGCGGAGGCGGCGGAACCCCT
CAGAGTCGGGCTCCGAGCCCTCTTCCTCACTTGATTCTGTTGAAAGTGGGGGTGCTGCCC
TTGGAGGACGGGGTTCCCCATCCTCACGCCTTCTCCTTGGATCAGATCATGGTCTTCGCA
AAGCCAAGAAACCAAAAAAGAAAACCAAGAAGAGAAGACACAAGTCGAACAGTCCCGAGA
GCGAGACAGACCCTGAGGAGAAAGCTGGCAAGGAGAGTGATGAGAAAGAACCAGAACAGG
ACAAGGACAGGGACCTCCGGCGGGCAGAGCTCCCTAACCGCTCCCCAGGCTTTGGAATCA
AGAAGGAGAAGACGGGCTGGGACACGTCGGAAAGTGAGCTGAGCGAGGGAGAGCTGGAAA
GACGGCGGCGGACACTCCTGCAGCAACTAGATGACCACCAGTGACCCAACGAGCCCCCCT
GCCCCGTCAGTGTGAGGTTGTGGCCTAGGTCACCCTCACCGTCCACTCCAGACTTCTTCC
TTAGTCGGGTCTGTGTCCAGTTTTCCTCAAGTAACCCCAACCCCAACACACCGCAGCCAG
CACCTCCCCAGGTTGCTCGTGGTGTTCAAGGTCCCCCACTTCCCGGACAACTAGTGCAGT
CCTTGCCCTCAGCCCCAGATCAGAGATTGGTGGTGGATGCCGTGTGGGGAGGGTGGTGCC
AGTAGATAAAATGTGAGGAGGGGCCTCTAGGAAGAGTGACAGGCCGGTGGACACAGCCTG
GGTGGCAGAGGGCGGGGTCCCTACCCGCTAGCGTCAGTGCCTGCTCCTGCCTGCCCAGGC
CCTTGGGCTTCCACCACTCCTTCCTCCAGCCCCAGGGCCTAGTGTATGTGTGTTCTGTTT
TGCTTTTGTTTTTTAAATAACAGTATTTATAAAGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CS39_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CS39_MOUSE

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               207-347, + strand, RNAz p=0.863439
               

               
               528-705, + strand, RNAz p=0.895681
               

               
               566-705, - strand, RNAz p=0.957984

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-347, + strand, RNAz p=0.863439
               

               
               528-705, + strand, RNAz p=0.895681
               

               
               566-705, - strand, RNAz p=0.957984

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_198900, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_198900, -

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               207-347, gnl|bosTau2|chr5 (21752366-21752226)
               

               
               207-347, gnl|Hg17|chr12 (48322285-48322425)
               

               
               207-347, gnl|Mm7|chr15 (99300088-99300228)
               


               
               528-705, gnl|bosTau2|chr5 (21751369-21751192)
               

               
               528-705, gnl|canFam2|chr27 (8028202-8028055)
               

               
               528-705, gnl|dasNov1|scaffold_88920 (1869-1717)
               

               
               528-705, gnl|hg17|chr12 (48323272-48323419)
               

               
               528-705, gnl|Hg17|chr12 (48323273-48323447)
               

               
               528-705, gnl|loxAfr1|scaffold_3183 (15447-15300)
               

               
               528-705, gnl|mm7|chr15 (99300967-99301114)
               

               
               528-705, gnl|Mm7|chr15 (99300968-99301145)
               

               
               528-705, gnl|panTro1|chr10 (49506724-49506871)
               

               
               528-705, gnl|rheMac2|chr11 (46784285-46784432)
               

               
               528-705, gnl|xenTro1|scaffold_133 (672592-672730)
               


               
               767-911, gnl|bosTau2|chr5 (21750763-21750619)
               

               
               767-911, gnl|Hg17|chr12 (48323910-48324054)
               

               
               767-911, gnl|Mm7|chr15 (99301487-99301625)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               207-347, gnl|bosTau2|chr5 (21752366-21752226)
               

               
               207-347, gnl|Hg17|chr12 (48322285-48322425)
               

               
               207-347, gnl|Mm7|chr15 (99300088-99300228)
               


               
               528-705, gnl|bosTau2|chr5 (21751369-21751192)
               

               
               528-705, gnl|canFam2|chr27 (8028202-8028055)
               

               
               528-705, gnl|dasNov1|scaffold_88920 (1869-1717)
               

               
               528-705, gnl|hg17|chr12 (48323272-48323419)
               

               
               528-705, gnl|Hg17|chr12 (48323273-48323447)
               

               
               528-705, gnl|loxAfr1|scaffold_3183 (15447-15300)
               

               
               528-705, gnl|mm7|chr15 (99300967-99301114)
               

               
               528-705, gnl|Mm7|chr15 (99300968-99301145)
               

               
               528-705, gnl|panTro1|chr10 (49506724-49506871)
               

               
               528-705, gnl|rheMac2|chr11 (46784285-46784432)
               

               
               528-705, gnl|xenTro1|scaffold_133 (672592-672730)
               


               
               767-911, gnl|bosTau2|chr5 (21750763-21750619)
               

               
               767-911, gnl|Hg17|chr12 (48323910-48324054)
               

               
               767-911, gnl|Mm7|chr15 (99301487-99301625)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ebs (0.236602)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

	207-347, + strand, RNAz p=0.863439
	528-705, + strand, RNAz p=0.895681
	566-705, - strand, RNAz p=0.957984

	207-347, gnl\|bosTau2\|chr5 (21752366-21752226)
	207-347, gnl\|Hg17\|chr12 (48322285-48322425)
	207-347, gnl\|Mm7\|chr15 (99300088-99300228)

	528-705, gnl\|bosTau2\|chr5 (21751369-21751192)
	528-705, gnl\|canFam2\|chr27 (8028202-8028055)
	528-705, gnl\|dasNov1\|scaffold_88920 (1869-1717)
	528-705, gnl\|hg17\|chr12 (48323272-48323419)
	528-705, gnl\|Hg17\|chr12 (48323273-48323447)
	528-705, gnl\|loxAfr1\|scaffold_3183 (15447-15300)
	528-705, gnl\|mm7\|chr15 (99300967-99301114)
	528-705, gnl\|Mm7\|chr15 (99300968-99301145)
	528-705, gnl\|panTro1\|chr10 (49506724-49506871)
	528-705, gnl\|rheMac2\|chr11 (46784285-46784432)
	528-705, gnl\|xenTro1\|scaffold_133 (672592-672730)

	767-911, gnl\|bosTau2\|chr5 (21750763-21750619)
	767-911, gnl\|Hg17\|chr12 (48323910-48324054)
	767-911, gnl\|Mm7\|chr15 (99301487-99301625)