Non-Coding RNA Search

Ss1.1-Pig3-SRG8025K21.3.5

Sequence:


               
               GTTCATCCCCATTCGTCTACCAGATCCGGAGCCAAGAGAAATGCTATTTATTTTGGAGTA
GTAGTAAAAAGGGCTCAAAGGATAAGGAGGCCATTCAGGCCTATTCTGAATCCCTGATGA
CACCAGCTCCCAAGGGAACTGTACTGCAAGAAGCAAGACTGTAGGGTCCCAAGGATGCCG
AGAGCCAGCCCAGCCTGGCCCCTCAGTCAGACCAGCTTCCCAGCCCCTACACCCCACTTC
TTCAGGACTCTCTCAGCGGACAGCCCACCAGTCCCCAAATCTGAGCCCTCCCACCTCCCG
TTGCCACATGCGTGTCACACACTGCACACCCCCCAGTACATGTTCTCACGTGTGCACATG
TATGCAGACACACTCAGGGATGGAGCTGCTGCTGAGGGGACCTGGGGAGAGTCTTGACAA
CAAAGAGTGTTCTGGAACCTTCTCTTGGAGTGATCCACATGCCTGCCCACAAGTGCTATG
GGCACGGGACCCCCTCCTTTGGGTGAGCGAGCCGGGGCGCTTGACAACTCTGACTGCCTC
TCCCCAGCTGCCTCCATCAGTCTTGAACCACTGCAGCCCCTGCCTGGGGGTTCTTCCAGG
CAGGACGGGGCCTTTACTCCAAGGGGCCAGCCATAGTCCTGAAACCCAGCCTGGGAGCAC
AGACTTCTTGTGCCGCAGCCAGCTGGGTAGGGGGCTGTGGCTCCATGCCAGACCTAAACC
CAGAGCTTTGCCTGCTGGAAAACTGGGCCTCAGAAACTGAGATGCACTTGACCGTGTCTT
CACCCCTGCAGGGTCTCTCTGAAATCTCTACAGGGGCTGGGTTTGGGTGTCCGGGGCTCC
TCCCTCCAGCCTAAACTGACAGCATCCTGTGTTCTGAGCCGGCCACTCCCTGGTGGGGGT
GCTGTATCCCAGGTCGCCACACCTCCACAACCAGGACCCTTGGTGCCCAGGTAGAGGTGG
AGAGGCCCCAGGCCACCAGCCTGGGTGTCTGGTCAGGTGGGAGACCTGTCTGCCCCACCC
CCCCGGGCTTCTGGTCTTGGGGCAAGCCTCTGTCTCTTTTCTACTGGAAGAGAAATGAAT
TTATCATCTTTAAAAAATAATATACAATTGAAGTAATAAACCTTTAAAAAAAAGTGAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCATCCCCATTCGTCTACCAGATCCGGAGCCAAGAGAAATGCTATTTATTTTGGAGTA
GTAGTAAAAAGGGCTCAAAGGATAAGGAGGCCATTCAGGCCTATTCTGAATCCCTGATGA
CACCAGCTCCCAAGGGAACTGTACTGCAAGAAGCAAGACTGTAGGGTCCCAAGGATGCCG
AGAGCCAGCCCAGCCTGGCCCCTCAGTCAGACCAGCTTCCCAGCCCCTACACCCCACTTC
TTCAGGACTCTCTCAGCGGACAGCCCACCAGTCCCCAAATCTGAGCCCTCCCACCTCCCG
TTGCCACATGCGTGTCACACACTGCACACCCCCCAGTACATGTTCTCACGTGTGCACATG
TATGCAGACACACTCAGGGATGGAGCTGCTGCTGAGGGGACCTGGGGAGAGTCTTGACAA
CAAAGAGTGTTCTGGAACCTTCTCTTGGAGTGATCCACATGCCTGCCCACAAGTGCTATG
GGCACGGGACCCCCTCCTTTGGGTGAGCGAGCCGGGGCGCTTGACAACTCTGACTGCCTC
TCCCCAGCTGCCTCCATCAGTCTTGAACCACTGCAGCCCCTGCCTGGGGGTTCTTCCAGG
CAGGACGGGGCCTTTACTCCAAGGGGCCAGCCATAGTCCTGAAACCCAGCCTGGGAGCAC
AGACTTCTTGTGCCGCAGCCAGCTGGGTAGGGGGCTGTGGCTCCATGCCAGACCTAAACC
CAGAGCTTTGCCTGCTGGAAAACTGGGCCTCAGAAACTGAGATGCACTTGACCGTGTCTT
CACCCCTGCAGGGTCTCTCTGAAATCTCTACAGGGGCTGGGTTTGGGTGTCCGGGGCTCC
TCCCTCCAGCCTAAACTGACAGCATCCTGTGTTCTGAGCCGGCCACTCCCTGGTGGGGGT
GCTGTATCCCAGGTCGCCACACCTCCACAACCAGGACCCTTGGTGCCCAGGTAGAGGTGG
AGAGGCCCCAGGCCACCAGCCTGGGTGTCTGGTCAGGTGGGAGACCTGTCTGCCCCACCC
CCCCGGGCTTCTGGTCTTGGGGCAAGCCTCTGTCTCTTTTCTACTGGAAGAGAAATGAAT
TTATCATCTTTAAAAAATAATATACAATTGAAGTAATAAACCTTTAAAAAAAAGTGAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               36-155, + strand, RNAz p=0.567455

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-155, + strand, RNAz p=0.567455

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               36-165, gnl|bosTau2|chr17 (27265856-27265727)
               

               
               36-165, gnl|Hg17|chr12 (123792237-123792108)
               

               
               36-165, gnl|Mm7|chr5 (124515485-124515356)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-165, gnl|bosTau2|chr17 (27265856-27265727)
               

               
               36-165, gnl|Hg17|chr12 (123792237-123792108)
               

               
               36-165, gnl|Mm7|chr5 (124515485-124515356)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cag (2.41911)
               

               
               cov (2.2466)
               

               
               jej (0.494609)
               

               
               lnt (0.284616)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (2.41911)
               

               
               cov (2.2466)
               

               
               jej (0.494609)
               

               
               lnt (0.284616)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

	36-165, gnl\|bosTau2\|chr17 (27265856-27265727)
	36-165, gnl\|Hg17\|chr12 (123792237-123792108)
	36-165, gnl\|Mm7\|chr5 (124515485-124515356)

	cag (2.41911)
	cov (2.2466)
	jej (0.494609)
	lnt (0.284616)
	nlu (0.191681)
	nep (0.183925)
	fbs (0.175346)
	duo (0.172801)
	nco (0.161734)
	cli (0.152812)
	pla (0.133672)
	ute (0.132784)
	cly (0.120642)
	cty (0.10408)