Ss1.1-Pig3-SRG8025K22.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTTCCTGTTTGGCTCTAAGCAGAGCCTCAGCGTCACGTCGCTGCCTCCCCGGGGTCCG TGGCCCTCTGGTCAGCGGGCCCAGTGGGATCCACGACCCACCGCCTCGCTGCTCCGTGCC GCAGCCACGCAGCCATGGCCACCGTTGAACAGAGTATCTGCCAAGCCCGGGCTTCCGTGA TGGTCTACGATGACACCAGTAAGAAATGGGTTCCCATCAAACCTGGCCAGCAGGGATTCA GCCGGATCAACATCTACCACAACACTGCCAGCAACACCTTCAGAGTTGTCGGGGTCAAGC TGCAGGATCAGCAGGTCGTGATCAATTATTCAATCGTGAAAGGGCTGAAGTACAATCAGG CGACGCCAACCTTCCACCAGTGGCGAGACGCCCGCCAGGTCTACGGTCTGAACTTCGCGA GCAAGGAGGAGGCGACCACCTTCTCCAACGCGATGCTCTTCGCGCTCAACGTCATCAACT CCCAGGAAGGAGGCCCCTCCAGCCAGCGTCAGGTGCAGAATGGCCCCTCTCCCGATGAGA TGGACATCCAGAGAAGACAAGTGATGGAGCAGCAGCAGCAGCGCCAGGAGTCTCTGGAGA GAAGGGCCTCAGGCACAGGACCCCTCCTGCCACCGGGACACCCCTCCTCCGCAGCCAGTG CCCCCCTCTCCTGTAGCGGGCCTCCACCGCCACCCCCACCCCCCGTCCCACCTCCGCCCA CGGGGGCCACACCGCCTCCCCCACCCCCACTGCCGGCTGGAGGCGCGCAGGGCACCAGCC ACGACGAGAGCTCCGTGTCGGGCCTGGCCGCCGCCCTGGCTGGGGCCAAGCTGAGAAGAG TCCCGCGGCCAGAAGATGCGCCCGGAGGCTCCAGTCCCAGCGGGACCTCAAAGTCTGACG CCAACCGGGCGAGCAGTGGGGGTGGAGGAGGAGGCCTCATGGAAGAAATGAACAAACTGC TGGCCAAGAGGAGGAGAGCAGCCTCCCAGACAGACAAGCCGGCGGATAAGAAGGAAGACG AAAGCCAAACGGAAGAGCCGAGCCCCTCCCCATCTCCGGGGGCCCGAGCAGCCAGCCAGC CCCCCAACTCCTCAGAGGCTGGCCGGAAGCCCTGGGAGCGGAGCAGCTCGGCCGAGAAGC CCGTGTCCTCCTTGCTGTCCAGAACCCCGTCCGTGGCAAAGAGCCCCGAAGCTAAGAGCC CCCTTCAGTCGCAGCCTCACTCTAGGATGAAGCCGGCGGGAAGTGTAAACGACGTGGCCC TGGATGCCTTAGATTTGGACCGGATGAAACAGGAGATCCTGGAGGAGGTGGTCCGAGAGC TCCACAAAGTGAAGGAGGAGATCATTGACGCCATCAGGCAGGAGCTGAGCGGGATCAGCA CCTCCTAGGGCCCGAGGCCCCACCGCCGCCCGAGACGCCGGCCCCCCGGACGCAGAGACA GCGAGGAGCTGGCGCCCCAGGCCTCCGGCCCGCGCACACGCACCGAAGCTGGATGTGCCG CGTTTAAGAGTCTTAACCTGTGGTAAAATATTAAAATGAGGAAAAAAGTTCAAATCTTGG ATTTTTTTAGATTTAACCTGACACAGAACACCAGGTCTCCTCGCCTTTTTTGTATTTTAT ATTTGCCTATTTAAGTGTACATTTCTTTTGGGTTAGAGAAGACCCTGCGTCCCGCGCTTC ATTAGATGGTCCGAGTGCTCCCGCAGGTGCCGCGGGCCGCGCCTCCCAGCGTCGTGGTGG CCGGGCTGTCCGGGCACCGCGCGTCCGTGTCCACGTGCTAATAAAGGCTTACTGTCCACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTTCCTGTTTGGCTCTAAGCAGAGCCTCAGCGTCACGTCGCTGCCTCCCCGGGGTCCG TGGCCCTCTGGTCAGCGGGCCCAGTGGGATCCACGACCCACCGCCTCGCTGCTCCGTGCC GCAGCCACGCAGCCATGGCCACCGTTGAACAGAGTATCTGCCAAGCCCGGGCTTCCGTGA TGGTCTACGATGACACCAGTAAGAAATGGGTTCCCATCAAACCTGGCCAGCAGGGATTCA GCCGGATCAACATCTACCACAACACTGCCAGCAACACCTTCAGAGTTGTCGGGGTCAAGC TGCAGGATCAGCAGGTCGTGATCAATTATTCAATCGTGAAAGGGCTGAAGTACAATCAGG CGACGCCAACCTTCCACCAGTGGCGAGACGCCCGCCAGGTCTACGGTCTGAACTTCGCGA GCAAGGAGGAGGCGACCACCTTCTCCAACGCGATGCTCTTCGCGCTCAACGTCATCAACT CCCAGGAAGGAGGCCCCTCCAGCCAGCGTCAGGTGCAGAATGGCCCCTCTCCCGATGAGA TGGACATCCAGAGAAGACAAGTGATGGAGCAGCAGCAGCAGCGCCAGGAGTCTCTGGAGA GAAGGGCCTCAGGCACAGGACCCCTCCTGCCACCGGGACACCCCTCCTCCGCAGCCAGTG CCCCCCTCTCCTGTAGCGGGCCTCCACCGCCACCCCCACCCCCCGTCCCACCTCCGCCCA CGGGGGCCACACCGCCTCCCCCACCCCCACTGCCGGCTGGAGGCGCGCAGGGCACCAGCC ACGACGAGAGCTCCGTGTCGGGCCTGGCCGCCGCCCTGGCTGGGGCCAAGCTGAGAAGAG TCCCGCGGCCAGAAGATGCGCCCGGAGGCTCCAGTCCCAGCGGGACCTCAAAGTCTGACG CCAACCGGGCGAGCAGTGGGGGTGGAGGAGGAGGCCTCATGGAAGAAATGAACAAACTGC TGGCCAAGAGGAGGAGAGCAGCCTCCCAGACAGACAAGCCGGCGGATAAGAAGGAAGACG AAAGCCAAACGGAAGAGCCGAGCCCCTCCCCATCTCCGGGGGCCCGAGCAGCCAGCCAGC CCCCCAACTCCTCAGAGGCTGGCCGGAAGCCCTGGGAGCGGAGCAGCTCGGCCGAGAAGC CCGTGTCCTCCTTGCTGTCCAGAACCCCGTCCGTGGCAAAGAGCCCCGAAGCTAAGAGCC CCCTTCAGTCGCAGCCTCACTCTAGGATGAAGCCGGCGGGAAGTGTAAACGACGTGGCCC TGGATGCCTTAGATTTGGACCGGATGAAACAGGAGATCCTGGAGGAGGTGGTCCGAGAGC TCCACAAAGTGAAGGAGGAGATCATTGACGCCATCAGGCAGGAGCTGAGCGGGATCAGCA CCTCCTAGGGCCCGAGGCCCCACCGCCGCCCGAGACGCCGGCCCCCCGGACGCAGAGACA GCGAGGAGCTGGCGCCCCAGGCCTCCGGCCCGCGCACACGCACCGAAGCTGGATGTGCCG CGTTTAAGAGTCTTAACCTGTGGTAAAATATTAAAATGAGGAAAAAAGTTCAAATCTTGG ATTTTTTTAGATTTAACCTGACACAGAACACCAGGTCTCCTCGCCTTTTTTGTATTTTAT ATTTGCCTATTTAAGTGTACATTTCTTTTGGGTTAGAGAAGACCCTGCGTCCCGCGCTTC ATTAGATGGTCCGAGTGCTCCCGCAGGTGCCGCGGGCCGCGCCTCCCAGCGTCGTGGTGG CCGGGCTGTCCGGGCACCGCGCGTCCGTGTCCACGTGCTAATAAAGGCTTACTGTCCACA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 146-316, gnl|bosTau2|chr16 (16728549-16728716) | |
| 146-316, gnl|canFam2|chr7 (42149936-42149762) | |
| 146-316, gnl|danRer3|chr20 (30360587-30360414) | |
| 146-316, gnl|dasNov1|scaffold_3421 (76775-76949) | |
| 146-316, gnl|echTel1|scaffold_42105 (1664-1490) | |
| 146-316, gnl|fr1|chrUn (53738634-53738813) | |
| 146-316, gnl|galGal2|chr3 (13684111-13683937) | |
| 146-316, gnl|hg17|chr1 (222061682-222061856) | |
| 146-316, gnl|Hg17|chr1 (222061851-222061684) | |
| 146-316, gnl|loxAfr1|scaffold_34934 (9037-9211) | |
| 146-316, gnl|mm7|chr1 (181946441-181946615) | |
| 146-316, gnl|Mm7|chr1 (181946610-181946443) | |
| 146-316, gnl|monDom2|scaffold_13 (33073613-33073787) | |
| 146-316, gnl|oryCun1|scaffold_214796 (86063-85889) | |
| 146-316, gnl|panTro1|chr1 (205876643-205876817) | |
| 146-316, gnl|rheMac2|chr1 (144828129-144827955) | |
| 146-316, gnl|rn3|chr13 (98161625-98161799) | |
| 146-316, gnl|tetNig1|chrUn_random (24627801-24627974) | |
| 146-316, gnl|xenTro1|scaffold_550 (67593-67419) | |
| 617-848, gnl|bosTau2|chr21 (44614238-44614007) | |
| 617-848, gnl|Hg17|chr14 (99664607-99664838) | |
| 617-848, gnl|Mm7|chr12 (106196294-106196525) | |
| 1350-1800, gnl|bosTau2|chr21 (44601024-44600561) | |
| 1350-1800, gnl|Hg17|chr14 (99679790-99680326) | |
| 1350-1800, gnl|Mm7|chr12 (106208927-106209415) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 146-316, gnl|bosTau2|chr16 (16728549-16728716) | |
| 146-316, gnl|canFam2|chr7 (42149936-42149762) | |
| 146-316, gnl|danRer3|chr20 (30360587-30360414) | |
| 146-316, gnl|dasNov1|scaffold_3421 (76775-76949) | |
| 146-316, gnl|echTel1|scaffold_42105 (1664-1490) | |
| 146-316, gnl|fr1|chrUn (53738634-53738813) | |
| 146-316, gnl|galGal2|chr3 (13684111-13683937) | |
| 146-316, gnl|hg17|chr1 (222061682-222061856) | |
| 146-316, gnl|Hg17|chr1 (222061851-222061684) | |
| 146-316, gnl|loxAfr1|scaffold_34934 (9037-9211) | |
| 146-316, gnl|mm7|chr1 (181946441-181946615) | |
| 146-316, gnl|Mm7|chr1 (181946610-181946443) | |
| 146-316, gnl|monDom2|scaffold_13 (33073613-33073787) | |
| 146-316, gnl|oryCun1|scaffold_214796 (86063-85889) | |
| 146-316, gnl|panTro1|chr1 (205876643-205876817) | |
| 146-316, gnl|rheMac2|chr1 (144828129-144827955) | |
| 146-316, gnl|rn3|chr13 (98161625-98161799) | |
| 146-316, gnl|tetNig1|chrUn_random (24627801-24627974) | |
| 146-316, gnl|xenTro1|scaffold_550 (67593-67419) | |
| 617-848, gnl|bosTau2|chr21 (44614238-44614007) | |
| 617-848, gnl|Hg17|chr14 (99664607-99664838) | |
| 617-848, gnl|Mm7|chr12 (106196294-106196525) | |
| 1350-1800, gnl|bosTau2|chr21 (44601024-44600561) | |
| 1350-1800, gnl|Hg17|chr14 (99679790-99680326) | |
| 1350-1800, gnl|Mm7|chr12 (106208927-106209415) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| ebs (0.709807) | |
| ece (0.687916) | |
| med (0.58126) | |
| cag (0.453583) | |
| fhi (0.339155) | |
| cty (0.31224) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| nms (0.213858) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cje (0.165235) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.709807) | |
| ece (0.687916) | |
| med (0.58126) | |
| cag (0.453583) | |
| fhi (0.339155) | |
| cty (0.31224) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| nms (0.213858) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cje (0.165235) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| eje (0.0988338) |