Non-Coding RNA Search

Ss1.1-Pig3-SRG8025M09.5

Sequence:


               
               TTAAGCCATGGGAGGTGGGACTGCTGAGCGTATGGACAGATGTCATTGCATTTGTCTTAG
CTGATAGGTTTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGCGCACGCCTGTATCCACACA
CAGCACCCTTACACACTCATGCTTTTGCCCCCAAGGAGACCATTTGCTGATGATGGCTGA
CCTTCTAGCATCTCTGTCACCTTGTTCTCACCTTCCCGACTCCATAGGGCTCTCAAGCAA
ATAAAGGGTGTGTGGGGGTTCAAGGACAGCATCGGGAGCAGGCAGGGGAGCCAGTACTGA
GGAGATAGGCCTGAGGGAGTCTCTGGCTGGTCTCTCAACAGGAGGAAAAACACGTTGGGG
GGGATGAAGGGTGGTATTCCCAGGGATCTCCACACCCTTTAAACTCCTCTGACTGTCTAG
AGATTTTTTTCCCACAGGTTCACCATTTTTTTACTGCCAATTTTTGCTTTTATTTGGCAC
TATCCCATATACAATGCAAATATTCTATAGCAAAAGAATAATGTACAATAATGATGTACT
TATAGGACAGAAATAAATATCTGAACCCACCCTCCTCCAAATGCAGCTTTCATCTGCATC
TTCAGGGCAAATTAACCTGATAATTGAAACAAAGAACAAATATGCTTTTTATTTAATTAT
CCAAATATTGCAAGAGGGTAGCTTGATGCTAGAATGTATTTTGGGACCAAGATTACAGAG
ATCTATCCAGAAGCTGGCATCCAGAGAGCATGATTCAGGCCATGTTTTTCTTTACATGGG
CCTCTTCAGGGACACAGACAATGGGTGGGCATCAGAGCTGTAGGGATGTGGGTGGGGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAGCCATGGGAGGTGGGACTGCTGAGCGTATGGACAGATGTCATTGCATTTGTCTTAG
CTGATAGGTTTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGCGCACGCCTGTATCCACACA
CAGCACCCTTACACACTCATGCTTTTGCCCCCAAGGAGACCATTTGCTGATGATGGCTGA
CCTTCTAGCATCTCTGTCACCTTGTTCTCACCTTCCCGACTCCATAGGGCTCTCAAGCAA
ATAAAGGGTGTGTGGGGGTTCAAGGACAGCATCGGGAGCAGGCAGGGGAGCCAGTACTGA
GGAGATAGGCCTGAGGGAGTCTCTGGCTGGTCTCTCAACAGGAGGAAAAACACGTTGGGG
GGGATGAAGGGTGGTATTCCCAGGGATCTCCACACCCTTTAAACTCCTCTGACTGTCTAG
AGATTTTTTTCCCACAGGTTCACCATTTTTTTACTGCCAATTTTTGCTTTTATTTGGCAC
TATCCCATATACAATGCAAATATTCTATAGCAAAAGAATAATGTACAATAATGATGTACT
TATAGGACAGAAATAAATATCTGAACCCACCCTCCTCCAAATGCAGCTTTCATCTGCATC
TTCAGGGCAAATTAACCTGATAATTGAAACAAAGAACAAATATGCTTTTTATTTAATTAT
CCAAATATTGCAAGAGGGTAGCTTGATGCTAGAATGTATTTTGGGACCAAGATTACAGAG
ATCTATCCAGAAGCTGGCATCCAGAGAGCATGATTCAGGCCATGTTTTTCTTTACATGGG
CCTCTTCAGGGACACAGACAATGGGTGGGCATCAGAGCTGTAGGGATGTGGGTGGGGACA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               555-670, - strand, RNAz p=0.642796

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               555-670, - strand, RNAz p=0.642796

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               90-386, gnl|bosTau2|chr3 (10753326-10753057)
               

               
               90-386, gnl|Hg17|chr1 (153209144-153208735)
               


               
               446-840, gnl|bosTau2|chr3 (10752960-10752557)
               

               
               446-840, gnl|Hg17|chr1 (153208639-153208241)
               

               
               446-840, gnl|Mm7|chr3 (88324299-88324755)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-386, gnl|bosTau2|chr3 (10753326-10753057)
               

               
               90-386, gnl|Hg17|chr1 (153209144-153208735)
               


               
               446-840, gnl|bosTau2|chr3 (10752960-10752557)
               

               
               446-840, gnl|Hg17|chr1 (153208639-153208241)
               

               
               446-840, gnl|Mm7|chr3 (88324299-88324755)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	90-386, gnl\|bosTau2\|chr3 (10753326-10753057)
	90-386, gnl\|Hg17\|chr1 (153209144-153208735)

	446-840, gnl\|bosTau2\|chr3 (10752960-10752557)
	446-840, gnl\|Hg17\|chr1 (153208639-153208241)
	446-840, gnl\|Mm7\|chr3 (88324299-88324755)