Non-Coding RNA Search

Ss1.1-Pig3-SRG8025M10.3

Sequence:


               
               TGCCCTTTGGCGCCCTGCTGGCCTGCTACTGCCGCCTGGCCCGCCGTCTCTGCCGCCGGG
ATGGCCCAGCGGGGCCTGTGGCCCAGGAGCGGCGTGACAAGGCAGCCCGCATGGCTGTGG
TGGTGGCAGCGGCCTTCGCCATCAGCTTCCTGCCTTTCCACATCACCAAGACAGCCTACC
TGGCGGTGCGCTCCACGCCCGGCGTCCCCTGCCCGGTGCTGGAGGCCTTCGCGGCCGCCT
ACAAGGGCACTCGGCCCTTCGCCAGTGCCAACAGCGTCTTGGACCCCATCCTCTTCTACT
TCACCCAGAAGAAGTTCCGCCGGCGGCCGCAAGAGCTGCTCCAGAAACTCACAGCCAAGT
GGCAGCGACAGGGTCGCTGAGTCCTCTGGTGCAGGACACCTGAGGCTGGAGCAGCCACTG
TGGTTGCCCCTGTGGCCTGGGCACCAGAAGCCCCGCCGACCCTCAGCTGGACAGGGAGTG
AGGTCCCCACGGCCCCCCATATTTCAGCTATTTATTAAGCCTTTTCTCTGGAGCAGGCCC
TGTGGGTACAGAGAAAGTCAGGCCTGGGCCTAGCTCTCCAGAAGGTCCCAGGAAGCCATG
GAGAGTCGGAGCAAAGCTGCTCACACAAATATAGTGCGACAAACACCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCCTTTGGCGCCCTGCTGGCCTGCTACTGCCGCCTGGCCCGCCGTCTCTGCCGCCGGG
ATGGCCCAGCGGGGCCTGTGGCCCAGGAGCGGCGTGACAAGGCAGCCCGCATGGCTGTGG
TGGTGGCAGCGGCCTTCGCCATCAGCTTCCTGCCTTTCCACATCACCAAGACAGCCTACC
TGGCGGTGCGCTCCACGCCCGGCGTCCCCTGCCCGGTGCTGGAGGCCTTCGCGGCCGCCT
ACAAGGGCACTCGGCCCTTCGCCAGTGCCAACAGCGTCTTGGACCCCATCCTCTTCTACT
TCACCCAGAAGAAGTTCCGCCGGCGGCCGCAAGAGCTGCTCCAGAAACTCACAGCCAAGT
GGCAGCGACAGGGTCGCTGAGTCCTCTGGTGCAGGACACCTGAGGCTGGAGCAGCCACTG
TGGTTGCCCCTGTGGCCTGGGCACCAGAAGCCCCGCCGACCCTCAGCTGGACAGGGAGTG
AGGTCCCCACGGCCCCCCATATTTCAGCTATTTATTAAGCCTTTTCTCTGGAGCAGGCCC
TGTGGGTACAGAGAAAGTCAGGCCTGGGCCTAGCTCTCCAGAAGGTCCCAGGAAGCCATG
GAGAGTCGGAGCAAAGCTGCTCACACAAATATAGTGCGACAAACACCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|53680465|gb|AAU89435.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|53680465|gb|AAU89435.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-239, - strand, RNAz p=0.754952
               

               
               287-446, - strand, RNAz p=0.947124
               

               
               320-439, + strand, RNAz p=0.987039

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-239, - strand, RNAz p=0.754952
               

               
               287-446, - strand, RNAz p=0.947124
               

               
               320-439, + strand, RNAz p=0.987039

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004154, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004154, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-482, gnl|bosTau2|chr15 (33378871-33378390)
               

               
               1-482, gnl|canFam2|chr21 (27933314-27932682)
               

               
               1-482, gnl|danRer3|chr18 (1093331-1093963)
               

               
               1-482, gnl|dasNov1|scaffold_50609 (4866-5498)
               

               
               1-482, gnl|echTel1|scaffold_177583 (8870-8238)
               

               
               1-482, gnl|fr1|chrUn (220441563-220440929)
               

               
               1-482, gnl|galGal2|chr1 (187464310-187463678)
               

               
               1-482, gnl|hg17|chr11 (72685510-72686142)
               

               
               1-482, gnl|Hg17|chr11 (72685819-72686286)
               

               
               1-482, gnl|loxAfr1|scaffold_28017 (31067-30455)
               

               
               1-482, gnl|mm7|chr7 (96985100-96984468)
               

               
               1-482, gnl|Mm7|chr7 (96984789-96984313)
               

               
               1-482, gnl|monDom2|scaffold_74 (4401038-4400406)
               

               
               1-482, gnl|oryCun1|scaffold_141324 (7366-6734)
               

               
               1-482, gnl|panTro1|chr9 (73964009-73964641)
               

               
               1-482, gnl|rheMac2|chr14 (71413197-71413829)
               

               
               1-482, gnl|rn3|chr1 (158462098-158461466)
               

               
               1-482, gnl|tetNig1|chr10 (9464675-9465309)
               

               
               1-482, gnl|xenTro1|scaffold_262 (1281369-1282004)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-482, gnl|bosTau2|chr15 (33378871-33378390)
               

               
               1-482, gnl|canFam2|chr21 (27933314-27932682)
               

               
               1-482, gnl|danRer3|chr18 (1093331-1093963)
               

               
               1-482, gnl|dasNov1|scaffold_50609 (4866-5498)
               

               
               1-482, gnl|echTel1|scaffold_177583 (8870-8238)
               

               
               1-482, gnl|fr1|chrUn (220441563-220440929)
               

               
               1-482, gnl|galGal2|chr1 (187464310-187463678)
               

               
               1-482, gnl|hg17|chr11 (72685510-72686142)
               

               
               1-482, gnl|Hg17|chr11 (72685819-72686286)
               

               
               1-482, gnl|loxAfr1|scaffold_28017 (31067-30455)
               

               
               1-482, gnl|mm7|chr7 (96985100-96984468)
               

               
               1-482, gnl|Mm7|chr7 (96984789-96984313)
               

               
               1-482, gnl|monDom2|scaffold_74 (4401038-4400406)
               

               
               1-482, gnl|oryCun1|scaffold_141324 (7366-6734)
               

               
               1-482, gnl|panTro1|chr9 (73964009-73964641)
               

               
               1-482, gnl|rheMac2|chr14 (71413197-71413829)
               

               
               1-482, gnl|rn3|chr1 (158462098-158461466)
               

               
               1-482, gnl|tetNig1|chr10 (9464675-9465309)
               

               
               1-482, gnl|xenTro1|scaffold_262 (1281369-1282004)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)

	1-239, - strand, RNAz p=0.754952
	287-446, - strand, RNAz p=0.947124
	320-439, + strand, RNAz p=0.987039

	1-482, gnl\|bosTau2\|chr15 (33378871-33378390)
	1-482, gnl\|canFam2\|chr21 (27933314-27932682)
	1-482, gnl\|danRer3\|chr18 (1093331-1093963)
	1-482, gnl\|dasNov1\|scaffold_50609 (4866-5498)
	1-482, gnl\|echTel1\|scaffold_177583 (8870-8238)
	1-482, gnl\|fr1\|chrUn (220441563-220440929)
	1-482, gnl\|galGal2\|chr1 (187464310-187463678)
	1-482, gnl\|hg17\|chr11 (72685510-72686142)
	1-482, gnl\|Hg17\|chr11 (72685819-72686286)
	1-482, gnl\|loxAfr1\|scaffold_28017 (31067-30455)
	1-482, gnl\|mm7\|chr7 (96985100-96984468)
	1-482, gnl\|Mm7\|chr7 (96984789-96984313)
	1-482, gnl\|monDom2\|scaffold_74 (4401038-4400406)
	1-482, gnl\|oryCun1\|scaffold_141324 (7366-6734)
	1-482, gnl\|panTro1\|chr9 (73964009-73964641)
	1-482, gnl\|rheMac2\|chr14 (71413197-71413829)
	1-482, gnl\|rn3\|chr1 (158462098-158461466)
	1-482, gnl\|tetNig1\|chr10 (9464675-9465309)
	1-482, gnl\|xenTro1\|scaffold_262 (1281369-1282004)