Non-Coding RNA Search

Ss1.1-Pig3-SRG8025N05.5

Sequence:


               
               CTGGCCTGCACGGTGGTGGAGCTGCCGTGCACCAGCAACGACAGCGCCCTCTTCATCCTC
CCTGACGACGGCAGGATGGCGGCCGTGGAAGCCAAGCTGCTTCCGGAGACGCTGAGGAGG
TGGAGAGACTCCCTGCACCACAGACGGATAGATGCCCTCTACCTGCCACGATTTTCTGTG
TCCGGCGACTATCAACTGAAGGACACCCTTAAGCAGCTGGGCATTCAGAAAGTGTTCACC
CACGAGGCTGACCTGTCAGGAGTCACAGGGGACAACAAACTGGGGGTTTCCAAGGTGATC
CACAAGGCGGTGCTTGATGTGGGCGATGAGGGCACGGAAGCAGCTGCTGCCACTGGAATT
GAGATGAGGACCTCAACCCTCCAGAGCCTCACTGTTATTTTCTCCAGGCCCTTTCTGTTC
GCCGTAATCGACAAAGACACTGGCACTGTCCTCTTTTTGGGCAAAGTCGCTGACCCCAGT
CCTGCCTAGAGCTCCCTTGCTCGTGGCTGGTTCCCCTCACTAAGGAGCTGAGTGCCCTGG
TCCCTGGGGGCAGGCTGGGCCCTGTGCCCCAAGAAAACCCCCATCCTGGCACTGCCTGCT
CACCCTTGGGAAGGTGACGGTCCCTCCGCTGGTGGCTCCACATGCCCAGGGAGTCTGCGC
CCTGTTCCGCGGAGGCTCTGAGACCTCCCACAGCAATAAAGCATCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCCTGCACGGTGGTGGAGCTGCCGTGCACCAGCAACGACAGCGCCCTCTTCATCCTC
CCTGACGACGGCAGGATGGCGGCCGTGGAAGCCAAGCTGCTTCCGGAGACGCTGAGGAGG
TGGAGAGACTCCCTGCACCACAGACGGATAGATGCCCTCTACCTGCCACGATTTTCTGTG
TCCGGCGACTATCAACTGAAGGACACCCTTAAGCAGCTGGGCATTCAGAAAGTGTTCACC
CACGAGGCTGACCTGTCAGGAGTCACAGGGGACAACAAACTGGGGGTTTCCAAGGTGATC
CACAAGGCGGTGCTTGATGTGGGCGATGAGGGCACGGAAGCAGCTGCTGCCACTGGAATT
GAGATGAGGACCTCAACCCTCCAGAGCCTCACTGTTATTTTCTCCAGGCCCTTTCTGTTC
GCCGTAATCGACAAAGACACTGGCACTGTCCTCTTTTTGGGCAAAGTCGCTGACCCCAGT
CCTGCCTAGAGCTCCCTTGCTCGTGGCTGGTTCCCCTCACTAAGGAGCTGAGTGCCCTGG
TCCCTGGGGGCAGGCTGGGCCCTGTGCCCCAAGAAAACCCCCATCCTGGCACTGCCTGCT
CACCCTTGGGAAGGTGACGGTCCCTCCGCTGGTGGCTCCACATGCCCAGGGAGTCTGCGC
CCTGTTCCGCGGAGGCTCTGAGACCTCCCACAGCAATAAAGCATCTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9968807|emb|CAC06756.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9968807|emb|CAC06756.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-143, gnl|bosTau2|chr21 (39149825-39149683)
               

               
               1-143, gnl|Hg17|chr14 (94155416-94155558)
               

               
               1-143, gnl|Mm7|chr12 (101905580-101905722)
               


               
               283-708, gnl|bosTau2|chr21 (40700331-40699908)
               

               
               283-708, gnl|Hg17|chr14 (94159688-94160137)
               

               
               283-708, gnl|Mm7|chr12 (101907721-101908142)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-143, gnl|bosTau2|chr21 (39149825-39149683)
               

               
               1-143, gnl|Hg17|chr14 (94155416-94155558)
               

               
               1-143, gnl|Mm7|chr12 (101905580-101905722)
               


               
               283-708, gnl|bosTau2|chr21 (40700331-40699908)
               

               
               283-708, gnl|Hg17|chr14 (94159688-94160137)
               

               
               283-708, gnl|Mm7|chr12 (101907721-101908142)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (0.152812)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               lun (0.150489)

	1-143, gnl\|bosTau2\|chr21 (39149825-39149683)
	1-143, gnl\|Hg17\|chr14 (94155416-94155558)
	1-143, gnl\|Mm7\|chr12 (101905580-101905722)

	283-708, gnl\|bosTau2\|chr21 (40700331-40699908)
	283-708, gnl\|Hg17\|chr14 (94159688-94160137)
	283-708, gnl\|Mm7\|chr12 (101907721-101908142)